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AT1G65920.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.809
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17317660 (2007): plasma membrane
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Pleckstrin homology (InterPro:IPR001849), Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G42140.1); Has 20784 Blast hits to 8293 proteins in 486 species: Archae - 65; Bacteria - 2335; Metazoa - 8187; Fungi - 1149; Plants - 2727; Viruses - 3; Other Eukaryotes - 6318 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2528-MONOMEReggNOG:COG5184eggNOG:ENOG410IFGQEMBL:AC009513
EMBL:CP002684EnsemblPlants:AT1G65920EnsemblPlants:AT1G65920.1entrez:842904
Gene3D:2.130.10.30Gene3D:2.30.29.30Gene3D:3.30.40.10GeneID:842904
GO:GO:0005773GO:GO:0005886GO:GO:0046872Gramene:AT1G65920.1
hmmpanther:PTHR22870hmmpanther:PTHR22870:SF177HOGENOM:HOG000240974InterPro:IPR000306
InterPro:IPR000408InterPro:IPR001849InterPro:IPR009091InterPro:IPR011011
InterPro:IPR011993InterPro:IPR013083InterPro:IPR013591InterPro:IPR017455
InterPro:IPR027988KEGG:ath:AT1G65920ncoils:CoilOMA:GRELCHE
Pfam:PF00415Pfam:PF01363Pfam:PF08381Pfam:PF13713
Pfam:PF16457Pfscan:PS50012Pfscan:PS50178Pfscan:PS51514
PhylomeDB:Q9SRZ7PIR:E96683PRINTS:PR00633PROSITE:PS00626
PROSITE:PS50012PROSITE:PS50178PROSITE:PS51514Proteomes:UP000006548
RefSeq:NP_176767.1scanprosite:PS00626SMART:SM00064SMR:Q9SRZ7
STRING:3702.AT1G65920.1SUPFAM:SSF50729SUPFAM:SSF50985SUPFAM:SSF57903
TAIR:AT1G65920UniGene:At.35824UniProt:Q9SRZ7
Coordinates (TAIR10) chr1:-:24525267..24529204
Molecular Weight (calculated) 111119.00 Da
IEP (calculated) 8.52
GRAVY (calculated) -0.43
Length 1006 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGEQQISVTV PRDRTDEQAI LALKKGAQLL KCRRRGNPKF CPFKLSMDEK YLIWYSGEEE RQLRLSSVIT IVRGQITPNF QKQAQSDRKE QSFSLIYANG
0101: EHTLDLICKD KAQADSWFKG LRAVITKHHN IRNSVNHRSS RGAQSCINSP AGFMRRKQNL GLLEETPDVT QIRSLCGSPS TLLEERCLSN GLSCSSDSFA
0201: ESDALGPVSS YYETDYDFRN SDCDRSTGSE LCRFSSQRFA ASPPLSIITQ PVTRSNVLKD IMIWGAITGL IDGSKNQNDA LSPKLLESAT MFDVQSISLG
0301: AKHAALVTRQ GEVFCWGNGN SGKLGLKVNI DIDHPKRVES LEDVAVRSVA CSDHQTCAVT ESGELYLWGI DGGTIEQSGS QFLTRKISDV LGGSLTVLSV
0401: ACGAWHTAIV TSSGQLFTYG SGTFGVLGHG SLESVTKPKE VESLRRMKVI SVSCGPWHTA AIVETANDRK FYNAKSCGKL FTWGDGDKGR LGHADSKRKL
0501: VPTCVTELID HDFIKVSCGW TLTVALSISG TVYTMGSSIH GQLGCPRAKD KSVNVVLGNL TRQFVKDIAS GSHHVAVLTS FGNVYTWGKG MNGQLGLGDV
0601: RDRNSPVLVE PLGDRLVESI ACGLNLTAAI CLHKEISLND QTACSSCKSA FGFTRRKHNC YNCGLLFCNA CSSKKAVNAS LAPNKSKLSR VCDSCFDHLW
0701: SITEFSRNVK MDNHTPRMQM VTRRVSEDLT EKQSENEMQN LPQANRSSDG QPRWGQVSGP SLFRFDKIST SSSLNLSVSA RRTSSTKIST SSESNKILTE
0801: EIERLKAVIK NLQRQCELGN EKMEECQQEL DKTWEVAKEE AEKSKAAKEI IKALASKLQA NKEKPSNPLK TGIACNPSQV SPIFDDSMSI PYLTPITTAR
0901: SQHETKQHVE KCVTKSSNRD SNIKLLVDAS PAITRTGYLQ NETQDSSAEQ VEQYEPGVYI TFTALPCGQK TLKRVRFSRK RFSEKEAQRW WEEKQVLVYN
1001: KYDAEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)