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AT1G65820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
AmiGO : vacuole 15215502
AmiGO : vacuole 15539469
TAIR : vacuole 15539469
TAIR : endoplasmic reticulum 16618929
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22430844 (2012): Golgi
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : microsomal glutathione s-transferase, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
microsomal glutathione s-transferase, putative; FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein (InterPro:IPR001129); Has 397 Blast hits to 397 proteins in 131 species: Archae - 0; Bacteria - 6; Metazoa - 200; Fungi - 90; Plants - 65; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-823-MONOMERBioCyc:ARA:GQT-824-MONOMEREMBL:AF461148EMBL:AY039567EMBL:AY066057EMBL:AY088618EMBL:CP002684
EnsemblPlants:AT1G65820EnsemblPlants:AT1G65820.1entrez:842893ExpressionAtlas:Q94BY2Gene3D:1.20.120.550GeneID:842893GO:GO:0016021
GO:GO:0016740Gramene:AT1G65820.1hmmpanther:PTHR10250hmmpanther:PTHR10250:SF16HOGENOM:HOG000116372IntAct:Q94BY2InterPro:IPR001129
InterPro:IPR023352Pfam:PF01124PhylomeDB:Q94BY2Proteomes:UP000006548Reactome:R-ATH-156590Reactome:R-ATH-5423646RefSeq:NP_176758.1
SUPFAM:SSF161084SwissPalm:Q94BY2TAIR:AT1G65820TMHMM:TMhelixUniGene:At.16378UniProt:Q94BY2
Coordinates (TAIR10) chr1:+:24485213..24486682
Molecular Weight (calculated) 16586.90 Da
IEP (calculated) 9.32
GRAVY (calculated) 0.46
Length 146 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAITEFLPK EYGYVVLVLV FYCFLNLWMG AQVGRARKRY NVPYPTLYAI ESENKDAKLF NCVQRGHQNS LEMMPMYFIL MILGGMKHPC ICTGLGLLYN
101: VSRFFYFKGY ATGDPMKRLT IGKYGFLGLL GLMICTISFG VTLILA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)