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AT1G65700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.850
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Small nuclear ribonucleoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G19120.1); Has 967 Blast hits to 967 proteins in 213 species: Archae - 2; Bacteria - 0; Metazoa - 384; Fungi - 316; Plants - 144; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).
Protein Annotations
EMBL:AC007234EMBL:AY070767EMBL:AY087015EMBL:AY094059EMBL:CP002684EnsemblPlants:AT1G65700EnsemblPlants:AT1G65700.1
EnsemblPlants:AT1G65700.2entrez:842881ExpressionAtlas:Q8VYI0GeneID:842881Genevisible:Q8VYI0GO:GO:0003723GO:GO:0005681
GO:GO:0006397GO:GO:0008380hmmpanther:PTHR15588hmmpanther:PTHR15588:SF9HOGENOM:HOG000223549InterPro:IPR001163InterPro:IPR010920
KEGG:ath:AT1G65700KO:K12627Pfam:PF01423Pfam:Q8VYI0PhylomeDB:Q8VYI0PIR:G96681PRIDE:Q8VYI0
PRO:PR:Q8VYI0ProteinModelPortal:Q8VYI0Proteomes:UP000006548Reactome:R-ATH-72163RefSeq:NP_001031238.1RefSeq:NP_176747.1SMART:SM00651
SMR:Q8VYI0SUPFAM:SSF50182TAIR:AT1G65700UniGene:At.28329UniProt:Q8VYI0
Coordinates (TAIR10) chr1:-:24434463..24435870
Molecular Weight (calculated) 10706.80 Da
IEP (calculated) 4.61
GRAVY (calculated) 0.05
Length 98 amino acids
Sequence (TAIR10)
(BLAST)
1: MAATTGLETL VDQIISVITN DGRNIVGVLK GFDQATNIIL DESHERVFST KEGVQQHVLG LYIIRGDNIG VIGELDEELD ASLDFSKLRA HPLKPVVH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)