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AT1G65690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27110948 (2016): cytosol
  • PMID:27110948 (2016): plasma membrane
  • PMID:27110948 (2016): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: NDR1/HIN1-like 25 (TAIR:AT5G36970.1); Has 985 Blast hits to 984 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 985; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIZJeggNOG:ENOG410YFY3EMBL:AY086125EMBL:CP002684EnsemblPlants:AT1G65690EnsemblPlants:AT1G65690.1entrez:842880
GeneID:842880GO:GO:0005829GO:GO:0005886GO:GO:0006970GO:GO:0009737GO:GO:0010116GO:GO:0016021
GO:GO:1902074Gramene:AT1G65690.1hmmpanther:PTHR31852hmmpanther:PTHR31852:SF1InterPro:IPR004864KEGG:ath:AT1G65690OMA:NTIRIRN
Pfam:PF03168PhylomeDB:Q8LD98Proteomes:UP000006548RefSeq:NP_564862.1STRING:3702.AT1G65690.1SwissPalm:Q8LD98TAIR:AT1G65690
TMHMM:TMhelixUniGene:At.35855UniProt:Q8LD98
Coordinates (TAIR10) chr1:-:24431642..24432898
Molecular Weight (calculated) 28575.80 Da
IEP (calculated) 10.21
GRAVY (calculated) -0.26
Length 252 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQHQKIYPV QDPEAATARP TAPLVPRGSS RSEHGDPSKV PLNQRPQRFV PLAPPKKRRS CCCRCFCYTF CFLLLLVVAV GASIGILYLV FKPKLPDYSI
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)