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AT1G65660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pre-mRNA splicing Prp18-interacting factor
Curator
Summary (TAIR10)
Encodes a CCHC zinc finger protein that may function as a step II splicing factor. In an epigenetic allele of SMP1 (in which SMP1 and SMP2 mRNA is reduced) organs are smaller and contain fewer cells.
Computational
Description (TAIR10)
SWELLMAP 1 (SMP1); CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Pre-mRNA splicing Prp18-interacting factor (InterPro:IPR021715); BEST Arabidopsis thaliana protein match is: Pre-mRNA splicing Prp18-interacting factor (TAIR:AT4G37120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPPPeggNOG:KOG2560EMBL:AC001229EMBL:AC007234EMBL:BT002797EMBL:CP002684EnsemblPlants:AT1G65660
EnsemblPlants:AT1G65660.1entrez:842877GeneID:842877Genevisible:Q9SHY8GO:GO:0000375GO:GO:0003727GO:GO:0005681
GO:GO:0006397GO:GO:0008270GO:GO:0008284GO:GO:0008380Gramene:AT1G65660.1hmmpanther:PTHR12942hmmpanther:PTHR12942:SF2
HOGENOM:HOG000194391InParanoid:Q9SHY8InterPro:IPR021715iPTMnet:Q9SHY8KEGG:ath:AT1G65660KO:K12819ncoils:Coil
OMA:IANSEECPaxDb:Q9SHY8Pfam:PF11708Pfam:Q9SHY8PhylomeDB:Q9SHY8PIR:E96681PRIDE:Q9SHY8
PRO:PR:Q9SHY8ProteinModelPortal:Q9SHY8Proteomes:UP000006548RefSeq:NP_564859.2STRING:3702.AT1G65660.1TAIR:AT1G65660tair10-symbols:SMP1
UniGene:At.35860UniProt:Q9SHY8
Coordinates (TAIR10) chr1:-:24418295..24421231
Molecular Weight (calculated) 61981.10 Da
IEP (calculated) 5.86
GRAVY (calculated) -1.17
Length 535 amino acids
Sequence (TAIR10)
(BLAST)
001: MATASVAFKS REDHRKQIEL EEARKAGLAP AEVDEDGKEI NPHIPQYMSS APWYLNSEKP SLKHQRKWKS DPNYTKSWYD RGAKIFQAEK YRKGACQNCG
101: AMTHTAKACM DRPRKIGAKY TNMNIAPDEK IESFELDYDG KRDRWNGYDP STYHRVIDLY EAKEDARKKY LKEQQLKKLE EKNNNEKGDD ANSDGEEDED
201: DLRVDEAKVD ESRQMDFAKV EKRVRTTGGG STGTVRNLRI REDTAKYLLN LDVNSAHYDP KTRSMREDPL PDADPNDKFY LGDNQYRNSG QALEFKQLNI
301: HSWEAFDKGQ DMHMQAAPSQ AELLYKSFQV AKEKLKSQTK DTIMDKYGNA ATEDEIPMEL LLGQSERQVE YDRAGRIIKG QEVILPKSKY EEDVHANNHT
401: SVWGSYWKDH QWGYKCCQQI IRNSYCTGSA GIEAAEAALD LMKANIARKE ATEESPKKVE EKRMASWGTD IPEDLELNEE ALANALKKED LSRREEKDER
501: KRKYNVKYNN DVTPEEMEAY RMKRVHHEDP MKDFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)