AT1G65660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pre-mRNA splicing Prp18-interacting factor | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a CCHC zinc finger protein that may function as a step II splicing factor. In an epigenetic allele of SMP1 (in which SMP1 and SMP2 mRNA is reduced) organs are smaller and contain fewer cells. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SWELLMAP 1 (SMP1); CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Pre-mRNA splicing Prp18-interacting factor (InterPro:IPR021715); BEST Arabidopsis thaliana protein match is: Pre-mRNA splicing Prp18-interacting factor (TAIR:AT4G37120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:24418295..24421231 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61981.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.86 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.17 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 535 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATASVAFKS REDHRKQIEL EEARKAGLAP AEVDEDGKEI NPHIPQYMSS APWYLNSEKP SLKHQRKWKS DPNYTKSWYD RGAKIFQAEK YRKGACQNCG 101: AMTHTAKACM DRPRKIGAKY TNMNIAPDEK IESFELDYDG KRDRWNGYDP STYHRVIDLY EAKEDARKKY LKEQQLKKLE EKNNNEKGDD ANSDGEEDED 201: DLRVDEAKVD ESRQMDFAKV EKRVRTTGGG STGTVRNLRI REDTAKYLLN LDVNSAHYDP KTRSMREDPL PDADPNDKFY LGDNQYRNSG QALEFKQLNI 301: HSWEAFDKGQ DMHMQAAPSQ AELLYKSFQV AKEKLKSQTK DTIMDKYGNA ATEDEIPMEL LLGQSERQVE YDRAGRIIKG QEVILPKSKY EEDVHANNHT 401: SVWGSYWKDH QWGYKCCQQI IRNSYCTGSA GIEAAEAALD LMKANIARKE ATEESPKKVE EKRMASWGTD IPEDLELNEE ALANALKKED LSRREEKDER 501: KRKYNVKYNN DVTPEEMEAY RMKRVHHEDP MKDFL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)