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AT1G65650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
UCH2; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578), Ubiquitinyl hydrolase, UCH37 type (InterPro:IPR017390); BEST Arabidopsis thaliana protein match is: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (TAIR:AT5G16310.1); Has 1283 Blast hits to 1275 proteins in 236 species: Archae - 0; Bacteria - 0; Metazoa - 633; Fungi - 351; Plants - 143; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G65650-MONOMEREC:3.4.19.12eggNOG:ENOG410XP0PeggNOG:KOG2778EMBL:AC001229EMBL:AC007234EMBL:AF412059
EMBL:AY065083EMBL:AY114549EMBL:CP002684EnsemblPlants:AT1G65650EnsemblPlants:AT1G65650.1entrez:842876Gene3D:3.40.532.10
GeneID:842876GO:GO:0004843GO:GO:0005634GO:GO:0005737GO:GO:0006511GO:GO:0010016GO:GO:0016579
Gramene:AT1G65650.1hmmpanther:PTHR10589hmmpanther:PTHR10589:SF30HOGENOM:HOG000203918IntAct:O04482InterPro:IPR001578InterPro:IPR017390
KEGG:ath:AT1G65650KO:K05610MEROPS:C12.A02ncoils:CoilOMA:DGAGNWCPANTHER:PTHR10589PaxDb:O04482
PaxDb:Q945M7Pfam:PF01088PhylomeDB:O04482PIRSF:PIRSF038120PRINTS:PR00707ProteinModelPortal:O04482Proteomes:UP000006548
RefSeq:NP_564858.1SMR:O04482STRING:3702.AT1G65650.1SUPFAM:SSF54001TAIR:AT1G65650tair10-symbols:UCH2UniGene:At.23747
UniProt:O04482
Coordinates (TAIR10) chr1:-:24415172..24417466
Molecular Weight (calculated) 37500.80 Da
IEP (calculated) 4.75
GRAVY (calculated) -0.38
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDSDSLNN LRPVYGLIFL FKWQAGEKDE RPTIQDQVSN LFFANQVINN ACATQAILAI LLNSPEVDIG
101: PELSALKEFT KNFPSDLKGL AINNSDSIRA AHNSFARPEP FVPEEQKAAT KDDDVYHFIS YIPVDGVLYE LDGLKEGPIS LGPCPGDQTG IEWLQMVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQRE QLLQQANTCV DKSEAEAVNA LIAEVGSGIE AASDKIVMEE EKFMKWRTEN IRRKHNYIPF
301: LFNFLKLLAE KKQLKPLIEK AKKQKTESST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)