suba logo
AT1G65520.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (peroxisomal marker)

At1g-GFP-65520
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : delta(3), delta(2)-enoyl CoA isomerase 1
Curator
Summary (TAIR10)
encodes a peroxisomal delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradation
Computational
Description (TAIR10)
delta(3), delta(2)-enoyl CoA isomerase 1 (ECI1); FUNCTIONS IN: carnitine racemase activity, catalytic activity, dodecenoyl-CoA delta-isomerase activity; INVOLVED IN: fatty acid catabolic process, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: 3-hydroxyacyl-CoA dehydratase 1 (TAIR:AT4G14440.1); Has 6860 Blast hits to 6860 proteins in 1261 species: Archae - 142; Bacteria - 4521; Metazoa - 587; Fungi - 178; Plants - 198; Viruses - 0; Other Eukaryotes - 1234 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G65520-MONOMERBioCyc:MetaCyc:AT1G65520-MONOMEREC:5.3.3.8eggNOG:ENOG410IM0KeggNOG:ENOG410YFAMEMBL:AC001229EMBL:AK229072
EMBL:BT010695EMBL:BT012425EMBL:CP002684EnsemblPlants:AT1G65520EnsemblPlants:AT1G65520.1entrez:842864Gene3D:3.90.226.10
GeneID:842864Genevisible:O04469GO:GO:0004165GO:GO:0005777GO:GO:0006635GO:GO:0009062Gramene:AT1G65520.1
gramene_pathway:5.3.3.8gramene_pathway:PWY-5137gramene_pathway:PWY-5138hmmpanther:PTHR11941hmmpanther:PTHR11941:SF84HOGENOM:HOG000080529InterPro:IPR001753
InterPro:IPR029045KEGG:ath:AT1G65520OMA:CILAMSHPaxDb:O04469Pfam:O04469Pfam:PF00378PhylomeDB:O04469
PIR:A96680PRIDE:O04469PRO:PR:O04469ProteinModelPortal:O04469Proteomes:UP000006548RefSeq:NP_176730.1SMR:O04469
STRING:3702.AT1G65520.1SUPFAM:SSF52096TAIR:AT1G65520tair10-symbols:ATECI1tair10-symbols:ECHICtair10-symbols:ECI1tair10-symbols:PEC11
UniGene:At.35874UniPathway:UPA00659UniProt:O04469
Coordinates (TAIR10) chr1:-:24361171..24361893
Molecular Weight (calculated) 25909.50 Da
IEP (calculated) 6.68
GRAVY (calculated) 0.12
Length 240 amino acids
Sequence (TAIR10)
(BLAST)
001: MCSLEKRDRL FILKLTGDGE HRLNPTLLDS LRSTINQIRS DPSFSQSVLI TTSDGKFFSN GYDLALAESN PSLSVVMDAK LRSLVADLIS LPMPTIAAVT
101: GHASAAGCIL AMSHDYVLMR RDRGFLYMSE LDIELIVPAW FMAVIRGKIG SPAARRDVML TAAKVTADVG VKMGIVDSAY GSAAETVEAA IKLGEEIVQR
201: GGDGHVYGKM RESLLREVLI HTIGEYESGS SVVRSTGSKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)