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AT1G65480.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PEBP (phosphatidylethanolamine-binding protein) family protein
Curator
Summary (TAIR10)
FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1.
Computational
Description (TAIR10)
FLOWERING LOCUS T (FT); FUNCTIONS IN: phosphatidylethanolamine binding, protein binding; INVOLVED IN: photoperiodism, flowering, positive regulation of flower development, regulation of flower development; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding, conserved site (InterPro:IPR001858), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); BEST Arabidopsis thaliana protein match is: PEBP (phosphatidylethanolamine-binding protein) family protein (TAIR:AT4G20370.1); Has 2182 Blast hits to 2182 proteins in 306 species: Archae - 0; Bacteria - 0; Metazoa - 594; Fungi - 140; Plants - 1404; Viruses - 3; Other Eukaryotes - 41 (source: NCBI BLink).
Protein Annotations
BioGrid:28080eggNOG:COG1881eggNOG:KOG3346EMBL:AB027504EMBL:AB027505EMBL:AC001229EMBL:AF152096
EMBL:AY065378EMBL:AY133813EMBL:CP002684EnsemblPlants:AT1G65480EnsemblPlants:AT1G65480.1entrez:842859EvolutionaryTrace:Q9SXZ2
Gene3D:3.90.280.10GeneID:842859Genevisible:Q9SXZ2GO:GO:0005634GO:GO:0005737GO:GO:0008429GO:GO:0009908
GO:GO:0009909GO:GO:0009911GO:GO:0010119GO:GO:0030154GO:GO:0048573hmmpanther:PTHR11362hmmpanther:PTHR11362:SF9
HOGENOM:HOG000237656InParanoid:Q9SXZ2IntAct:Q9SXZ2InterPro:IPR001858InterPro:IPR008914InterPro:IPR031095KEGG:ath:AT1G65480
KO:K16223OMA:QLLYPRRPANTHER:PTHR11362:SF9PaxDb:Q9SXZ2PDB:1WKPPDBsum:1WKPPfam:PF01161
Pfam:Q9SXZ2PhylomeDB:Q9SXZ2PIR:T52447PIR:T52448PRIDE:Q9SXZ2PRO:PR:Q9SXZ2PROSITE:PS01220
ProteinModelPortal:Q9SXZ2Proteomes:UP000006548RefSeq:NP_176726.1scanprosite:PS01220SMR:Q9SXZ2STRING:3702.AT1G65480.1SUPFAM:SSF49777
TAIR:AT1G65480tair10-symbols:FTUniGene:At.469UniProt:Q9SXZ2
Coordinates (TAIR10) chr1:+:24331510..24333689
Molecular Weight (calculated) 19809.70 Da
IEP (calculated) 8.06
GRAVY (calculated) -0.26
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MSINIRDPLI VSRVVGDVLD PFNRSITLKV TYGQREVTNG LDLRPSQVQN KPRVEIGGED LRNFYTLVMV DPDVPSPSNP HLREYLHWLV TDIPATTGTT
101: FGNEIVCYEN PSPTAGIHRV VFILFRQLGR QTVYAPGWRQ NFNTREFAEI YNLGLPVAAV FYNCQRESGC GGRRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)