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AT1G65440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : global transcription factor group B1
Curator
Summary (TAIR10)
Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.
Computational
Description (TAIR10)
global transcription factor group B1 (GTB1); FUNCTIONS IN: transcription elongation regulator activity, hydrolase activity, acting on ester bonds, RNA binding; INVOLVED IN: chromatin assembly or disassembly, transcription initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), SH2 motif (InterPro:IPR000980), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Transcription elongation factor Spt6 (InterPro:IPR017072); BEST Arabidopsis thaliana protein match is: Transcription elongation factor Spt6 (TAIR:AT1G63210.1); Has 154550 Blast hits to 61131 proteins in 3458 species: Archae - 353; Bacteria - 39994; Metazoa - 50717; Fungi - 13479; Plants - 12820; Viruses - 1975; Other Eukaryotes - 35212 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2183eggNOG:KOG1856EMBL:CP002684EnsemblPlants:AT1G65440EnsemblPlants:AT1G65440.1entrez:842855ExpressionAtlas:A8MS85
Gene3D:1.10.150.310Gene3D:1.10.3500.10Gene3D:2.40.50.140Gene3D:3.30.420.140GeneID:842855GO:GO:0003677GO:GO:0003746
GO:GO:0005829GO:GO:0006139GO:GO:0006357GO:GO:0009506GO:GO:0032784Gramene:AT1G65440.1hmmpanther:PTHR10145
hmmpanther:PTHR10145:SF6HOGENOM:HOG000241511InParanoid:A8MS85InterPro:IPR000980InterPro:IPR003029InterPro:IPR006641InterPro:IPR010994
InterPro:IPR012337InterPro:IPR012340InterPro:IPR017072InterPro:IPR022967InterPro:IPR023097InterPro:IPR023323InterPro:IPR027999
InterPro:IPR028083InterPro:IPR028088InterPro:IPR028231InterPro:IPR032706iPTMnet:A8MS85ncoils:CoilOMA:SGVKWLR
PANTHER:PTHR10145:SF6PaxDb:A8MS85Pfam:PF14632Pfam:PF14633Pfam:PF14635Pfam:PF14639Pfam:PF14641
Pfam:PF14878Pfscan:PS50126PhylomeDB:A8MS85PIRSF:PIRSF036947PRIDE:A8MS85PROSITE:PS50126ProteinModelPortal:A8MS85
Proteomes:UP000006548RefSeq:NP_176723.3SMART:SM00316SMART:SM00732SMR:A8MS85STRING:3702.AT1G65440.1SUPFAM:0054854
SUPFAM:SSF47781SUPFAM:SSF50249SUPFAM:SSF53098SUPFAM:SSF55550TAIR:AT1G65440tair10-symbols:GTB1UniGene:At.20510
UniProt:A8MS85
Coordinates (TAIR10) chr1:-:24306945..24314327
Molecular Weight (calculated) 185044.00 Da
IEP (calculated) 4.84
GRAVY (calculated) -0.84
Length 1647 amino acids
Sequence (TAIR10)
(BLAST)
0001: MARNAISDDE EDHELEDDDG EPVHGDPAEH DENDDEEDDD DVGNEYENDG FIVNDEDEEE EEEEDEERKD SDEERQKKKK KRKKKDEGLD EDDYLLLQDN
0101: NVKFKKRQYK RLKKAQREQG NGQGESSDDE FDSRGGTRRS AEDKIKDRLF DDVDVDDPPD DVGDEEDLVV EEDVVGSEDE MADFIVDEDD EHGPPKRGNS
0201: KKKKYRQGSD ITAMRDANEI FGDVDELLTI RKKGLASNQR MERRLEDEFE PTVLSEKYMT GNDDEIRQLD IPERMQISEE STGSPPVDEI SIEEESNWIY
0301: AQLASQLRES DGTFDGRGFS VNKDDIAKFL ELHHVQKLEI PFIAMYRKEQ CRSLLDTGDF DGANQGKKPE TKWHKVFWMI HDLDKKWLLL RKRKMALHGY
0401: YTKRYEEESR RVYDETRLNL NQYLFESVIK SLKVAETERE VDDVDSKFNL HFPPGEIGVD EGQYKRPKRK SQYSICSKAG LWEVANKFGY SAEQLGLALS
0501: LEKLVDELED AKETPEEMAK NFVCAMFENS LAVLKGARHM AAVEISCEPS VKKYVRGIYM ENAVVSTSPT ADGNTVIDSF HQFSGIKWLR EKPLSKFEGA
0601: QWLLIQKGEE EKLLQVTFKL PENYMNRLIS DCNEHYLSVG VSKYAQLWNE QRKLILEDAL HAFLLPSMEK EARSLLTSRA KSRLLSEYGQ ALWNKVSAGP
0701: YQKKEMDINL DEEAAPRVMA CCWGPGKPPN TFVMLDSSGE VLDVLYAGSL TSRSQNVNDQ QRKKSDQDRV LKFMMDHQPH VVALGAVNLS CTRLKDDIYE
0801: VIFQMVEEKP RDVGHGMDDL SIVYVDESLP RLYENSRISG EQLPQQSGNV RRAVALGRYL QNPLAMVATL CGPGREILSW KLHPLENFLQ LDEKYGMVEQ
0901: VMVDITNQVG IDINLAASHD WFFSPLQFIS GLGPRKAASL QRSLVRAGSI FVRKDLIMHG LGKKVFVNAA GFLRIRRSGL AASSSQFIDL LDDTRIHPES
1001: YSLAQELAKD IYDEDVRGDS NDDEDAIEMA IEHVRDRPAS LRKVVLDEYL ASKKRENKKE TYSNIIRELS CGFQDWRIPF KEPSPDEEFY MISGETEDTI
1101: AEGRIVQASV RRLQNGRAIC VLDSGLTGML MKEDFSDDGR DIVDLADQLK EGDILTCKIK SIQKQRYQVF LICKESEMRN NRHQHNQNVD AYYHEDRNSL
1201: QLVKEKARKE KELVRKHFKS RMIVHPRFQN ITADQATEYL SDKDFGESIV RPSSRGLNFL TLTLKIYDGV YAHKEIAEGG KENKDITSLQ CIGKTLTIGE
1301: DTFEDLDEVM DRYVDPLVSH LKTMLNYRKF RKGTKSEVDD LLRIEKGENP SRIVYCFGIS HEHPGTFILS YIRSTNPHHE YIGLYPKGFK FRKRMFEDID
1401: RLVAYFQRHI DDPLQESAPS IRSIAAKVPM RSPADHGSSG GSGWGSSQSE GGWKGNSDRS GSGRGGEYRN GGGRDGHPSG APRPYGGRGR GRGRGRRDDM
1501: NSDRQDGNGD WGNNDTGTAD GGWGNSGGGG WGSESAGKKT GGGSTGGWGS ESGGNKSDGA GSWGSGSGGG GSGGWGNDSG GKKSSEDGGF GSGSGGGGSD
1601: WGNESGGKKS SADGGWGSES GGKKSDGEGG WGNEPSSRKS DGGGGGW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)