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AT1G65410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17938172 (2007): plastid plastid envelope plastid inner membrane
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:22923678 (2012): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : non-intrinsic ABC protein 11
Curator
Summary (TAIR10)
Encodes a member of NAP subfamily of transporters. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.
Computational
Description (TAIR10)
non-intrinsic ABC protein 11 (NAP11); FUNCTIONS IN: transporter activity, ATPase activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: non-intrinsic ABC protein 3 (TAIR:AT1G67940.1); Has 424474 Blast hits to 380294 proteins in 4085 species: Archae - 7338; Bacteria - 330543; Metazoa - 9238; Fungi - 6335; Plants - 5254; Viruses - 18; Other Eukaryotes - 65748 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2852-MONOMERBioGrid:28073eggNOG:COG1127eggNOG:ENOG410INIYEMBL:AC004512EMBL:AF361573EMBL:AF528639
EMBL:AF528640EMBL:AF528641EMBL:AF528642EMBL:AF528643EMBL:AF528644EMBL:AF528645EMBL:AF528646
EMBL:AF528647EMBL:AY093985EMBL:CP002684EnsemblPlants:AT1G65410EnsemblPlants:AT1G65410.1entrez:842852Gene3D:3.40.50.300
GeneID:842852Genevisible:Q9AT00GO:GO:0005215GO:GO:0005524GO:GO:0006869GO:GO:0009507GO:GO:0009536
GO:GO:0009570GO:GO:0016887Gramene:AT1G65410.1hmmpanther:PTHR24220hmmpanther:PTHR24220:SF441InParanoid:Q9AT00InterPro:IPR003439
InterPro:IPR003593InterPro:IPR017871InterPro:IPR027417KEGG:ath:AT1G65410OMA:FARAIMSPaxDb:Q9AT00Pfam:PF00005
Pfam:Q9AT00Pfscan:PS50893PhylomeDB:Q9AT00PIR:T02364PRIDE:Q9AT00PRO:PR:Q9AT00PROSITE:PS00211
PROSITE:PS50893ProteinModelPortal:Q9AT00Proteomes:UP000006548RefSeq:NP_564850.1scanprosite:PS00211SMART:SM00382SMR:Q9AT00
STRING:3702.AT1G65410.1SUPFAM:SSF52540TAIR:AT1G65410tair10-symbols:ATNAP11tair10-symbols:NAP11tair10-symbols:TGD3TCDB:3.A.1.27.2
UniGene:At.28694UniGene:At.66795UniProt:Q9AT00
Coordinates (TAIR10) chr1:+:24295362..24297332
Molecular Weight (calculated) 37520.30 Da
IEP (calculated) 7.86
GRAVY (calculated) -0.08
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSLSCSSSS SSLLPPSLHY HGSSSVQSIV VPRRSLISFR RKVSCCCIAP PQNLDNDATK FDSLTKSGGG MCKERGLEND SDVLIECRDV YKSFGEKHIL
101: KGVSFKIRHG EAVGVIGPSG TGKSTILKIM AGLLAPDKGE VYIRGKKRAG LISDEEISGL RIGLVFQSAA LFDSLSVREN VGFLLYERSK MSENQISELV
201: TQTLAAVGLK GVENRLPSEL SGGMKKRVAL ARSLIFDTTK EVIEPEVLLY DEPTAGLDPI ASTVVEDLIR SVHMTDEDAV GKPGKIASYL VVTHQHSTIQ
301: RAVDRLLFLY EGKIVWQGMT HEFTTSTNPI VQQFATGSLD GPIRY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)