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AT1G65330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : MADS-box transcription factor family protein
Curator
Summary (TAIR10)
Type I MADS-box protein, regulated by MEA and FIE, expressed transiently after fertilization in embryo and endosperm.
Computational
Description (TAIR10)
PHERES1 (PHE1); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 38 (TAIR:AT1G65300.1); Has 3933 Blast hits to 3931 proteins in 449 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 84; Plants - 3665; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Protein Annotations
BioGrid:28062eggNOG:COG5068eggNOG:KOG0014EMBL:AC004512EMBL:AF528574EMBL:AF528575EMBL:AF528576
EMBL:AF528577EMBL:AF528578EMBL:AF528579EMBL:AF528580EMBL:AF528581EMBL:AF528582EMBL:CP002684
EnsemblPlants:AT1G65330EnsemblPlants:AT1G65330.1entrez:842841GeneID:842841Genevisible:O80805GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009793GO:GO:0090406Gramene:AT1G65330.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF153
HOGENOM:HOG000006067InParanoid:O80805IntAct:O80805InterPro:IPR002100KEGG:ath:AT1G65330ncoils:CoilOMA:VIRRVEI
PaxDb:O80805Pfam:O80805Pfam:PF00319Pfscan:PS50066PhylomeDB:O80805PIR:T02356PRIDE:O80805
PRINTS:PR00404PRO:PR:O80805PROSITE:PS50066ProteinModelPortal:O80805Proteomes:UP000006548RefSeq:NP_176712.1SMART:SM00432
SMR:O80805STRING:3702.AT1G65330.1SUPFAM:SSF55455TAIR:AT1G65330tair10-symbols:AGL37tair10-symbols:PHE1UniGene:At.64882
UniProt:O80805
Coordinates (TAIR10) chr1:-:24266481..24267320
Molecular Weight (calculated) 31955.30 Da
IEP (calculated) 5.10
GRAVY (calculated) -0.56
Length 279 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGKMKLSFI ENDSVRKTTF TKRKKGMLKK FNELVTLCGV DACAVIRSPY NSIQEPWPSR EGVEEVMSKF MEFSVLDRTK KMVDQETFLR QRIAKETERL
101: QKLRDENRNS QIRDLMFGCL KGEVDVSHLH GRDLLDLNVF LNKYLNGVIR RVEILKENGE SSSSVPPPIG VAPTVVDASV PIGFDGRMIQ DQNQNQQEPV
201: QFQYQALYDF YDQIPKKLHD FNMKMNIDPN QSMNLDLNDG EDEGIPCMDN NNYHPEIDCL ATVTTAPTDV CAPNIINDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)