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AT1G65300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AGAMOUS-like 38
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 38 (AGL38); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: endosperm; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT1G65330.1); Has 4029 Blast hits to 4021 proteins in 424 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 8; Plants - 3898; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
BioGrid:28059eggNOG:COG5068eggNOG:KOG0014EMBL:AC004512EMBL:AY141245EMBL:CP002684EnsemblPlants:AT1G65300
EnsemblPlants:AT1G65300.1entrez:842838GeneID:842838Genevisible:Q7XJK8GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351Gramene:AT1G65300.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF153HOGENOM:HOG000006067InParanoid:Q7XJK8IntAct:Q7XJK8
InterPro:IPR002100iPTMnet:Q7XJK8KEGG:ath:AT1G65300ncoils:CoilPaxDb:Q7XJK8Pfam:PF00319Pfam:Q7XJK8
Pfscan:PS50066PhylomeDB:Q7XJK8PIR:T02353PRIDE:Q7XJK8PRINTS:PR00404PRO:PR:Q7XJK8PROSITE:PS50066
ProteinModelPortal:Q7XJK8Proteomes:UP000006548RefSeq:NP_176709.2SMART:SM00432SMR:Q7XJK8STRING:3702.AT1G65300.1SUPFAM:SSF55455
TAIR:AT1G65300tair10-symbols:AGL38tair10-symbols:PHE2UniGene:At.35902UniProt:Q7XJK8
Coordinates (TAIR10) chr1:+:24254929..24255765
Molecular Weight (calculated) 31659.80 Da
IEP (calculated) 5.23
GRAVY (calculated) -0.55
Length 278 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRKMKLSLI ENSVSRKTTF TKRKKGMTKK LTELVTLCGV EACAVVYSPF NSIPEAWPSR EGVEDVVSKF MELSVLDRTK KMVDQETFIS QRIAKEKEQL
101: QKLRDENHNS QIRELMFGCL KGETNVYNLD GRDLQDLSLY IDKYLNGLTR RIEILIENGE SSSSLPLPIV ANAAAPVGFD GPMFQYHNQN QQKPVQFQYQ
201: ALYDFYDQIP KKIHGFNMNM NKDSNQSMVL DLNQNLNDGE DEGIPCMDNN NYHPEIDCLA TVTTAPTDVC APNITNDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)