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AT1G65260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27208228 (2016): plastid
  • PMID:15210715 (2004): plastid plastid envelope plastid inner membrane
  • PMID:27177187 (2016): nucleus
  • PMID:26987276 (2016): plastid
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22616989 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16207701 (2006): plastid
  • PMID:15322131 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plastid transcriptionally active 4
Curator
Summary (TAIR10)
Encodes a protein required for thylakoid membrane formation.
Computational
Description (TAIR10)
plastid transcriptionally active 4 (PTAC4); INVOLVED IN: vesicle organization, thylakoid membrane organization; LOCATED IN: in 8 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PspA/IM30 (InterPro:IPR007157); Has 3123 Blast hits to 3108 proteins in 1139 species: Archae - 38; Bacteria - 2412; Metazoa - 160; Fungi - 68; Plants - 89; Viruses - 95; Other Eukaryotes - 261 (source: NCBI BLink).
Protein Annotations
BioGrid:28054eggNOG:COG1842eggNOG:ENOG410IJ56EMBL:AC004512EMBL:AY045845EMBL:AY117153EMBL:CP002684
EnsemblPlants:AT1G65260EnsemblPlants:AT1G65260.1entrez:842833GeneID:842833Genevisible:O80796GO:GO:0009295GO:GO:0009507
GO:GO:0009508GO:GO:0009534GO:GO:0009535GO:GO:0009570GO:GO:0009706GO:GO:0009941GO:GO:0010027
GO:GO:0016050Gramene:AT1G65260.1hmmpanther:PTHR31088hmmpanther:PTHR31088:SF6HOGENOM:HOG000227268InParanoid:O80796InterPro:IPR007157
iPTMnet:O80796KEGG:ath:AT1G65260KO:K03969ncoils:CoilOMA:RMEDKVNPaxDb:O80796Pfam:O80796
Pfam:PF04012PhylomeDB:O80796PIR:T02347PRIDE:O80796PRO:PR:O80796ProteinModelPortal:O80796Proteomes:UP000006548
RefSeq:NP_564846.1SMR:O80796STRING:3702.AT1G65260.1TAIR:AT1G65260tair10-symbols:PTAC4tair10-symbols:VIPP1UniGene:At.21729
UniProt:O80796
Coordinates (TAIR10) chr1:+:24236329..24240428
Molecular Weight (calculated) 36394.30 Da
IEP (calculated) 9.70
GRAVY (calculated) -0.56
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MALKASPVTG LFPPLRPTAS SSPSTSSNRP CSLRILPLRT SFFGNSSGAL RVNVLRLACD NRLRCNGHGA TMNLFERFSR VVKSYANALI SSFEDPEKIL
101: EQTVIEMNSD LTKMRQATAQ VLASQKQLQN KYKAAQQSSD DWYKRAQLAL AKGDEDLARE ALKRRKSFAD NATALKTQLD QQKGVVDNLV SNTRLLESKI
201: QEAKAKKDTL LARARTAKTA TKVQEMIGTV NTSGALSAFE KMEEKVMAME SEADALTQIG TDELEGKFQM LETSSVDDDL ADLKKELSGS SKKGELPPGR
301: STVAASTRYP FKDSEIENEL NELRRKANDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)