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AT1G65130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Ubiquitin carboxyl-terminal hydrolase-related protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT1G65200.1); Has 327 Blast hits to 290 proteins in 68 species: Archae - 0; Bacteria - 15; Metazoa - 27; Fungi - 22; Plants - 225; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSNEeggNOG:KOG1887EMBL:CP002684EnsemblPlants:AT1G65130
EnsemblPlants:AT1G65130.1entrez:842820GeneID:842820GO:GO:0016579
GO:GO:0036459GO:GO:0046872Gramene:AT1G65130.1hmmpanther:PTHR22975
hmmpanther:PTHR22975:SF9InParanoid:F4I9U9InterPro:IPR006865InterPro:IPR006866
InterPro:IPR007087KEGG:ath:AT1G65130ncoils:CoilOMA:CIREDER
PaxDb:F4I9U9Pfam:PF00443Pfam:PF04780Pfam:PF04781
Pfscan:PS50157PRIDE:F4I9U9PROSITE:PS00028PROSITE:PS50157
ProteinModelPortal:F4I9U9Proteomes:UP000006548RefSeq:NP_176692.3scanprosite:PS00028
SUPFAM:SSF54001TAIR:AT1G65130UniGene:At.52373UniProt:F4I9U9
Coordinates (TAIR10) chr1:-:24196472..24201022
Molecular Weight (calculated) 123899.00 Da
IEP (calculated) 5.66
GRAVY (calculated) -0.44
Length 1079 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKPPSLEDCR LDESYFAGGD HIKAMVIIED SIFKQGKGND LLGLLHFQQG SIFRAQARRT ENSDVKFTFL LGSVECFAES EGFSSFTALS LFEMGQHLGS
0101: SMYYKKSVEK AKEYLSVLAE LDEYGPKEVK SQKDVERIIE DAESRIAGGK SLVASPIVRS EPKAKESKKN PDSKLRSFWR GLDDEFKRNF LKMEITKLIS
0201: FVEAMYGKEG RDALDQVLTF ARENRKWRFW MCRTCSKKFS SPEECKNHLG QEHAAEFKPS STKDMPQTVT KVWGHKISVG GWDPVDAAAA VEMIKNRLQD
0301: VKAFAYENGW SKDWPLAIDE ERSKLLKEIK LLLVSFWELK ILSCSIRDWM MQFPVKHLAQ FEVSEHTLTT ECRLVETPQS ICFLEFRELN QILHFLRAIK
0401: GERDDGKNLV CKAVDSFWDG TRVKEKIDFD SQFSFLLLDK RLLKCKLTRF DNEGTVNVFD PNDYYANAQV HGDDILSWLA DYSLGDEIFR FPKPIRTHNI
0501: DIWVAVLRAV QFTCRTLRTK YEKKLRMICY DAALIDANNL CIREDERRRN IPEDQWTLYA SLLCDKCEEN IRRHAGDSLT TKLSLCAVQD VLGGASQPTF
0601: DFTDLVDCRN LINGHKHISD DIVLKSINLL KSVVTYKVPL VDSKILLVEN SRISLLKDLV SLSVFDYRSY ILQPVKLYLE EELEDAAPPE LLSEKKQEKA
0701: KKSGSKKRNH KSTKRTSASM SSHLDQDVEQ AKEDSMELED DTKGEKSLFE ISSNTNNQEE ATKGDSNMQS MPREDLETVN GKAATRYNSA LDMMLKSLCN
0801: IKVLKEDLVN NRKPFSENQV PCALRDFFSA FVSEKIKEEE LYGHLLSNLL DSLEELHSLS SNAAEVLVAI LEFCHCWKSP ESESLVTRLF TLEEYERMSC
0901: RKCRRKPNYP EQSSYGIVMA ADSIRDLECA LGNIMFEDTL KVIRMNNEMI CDVGTGGCGE RNLVHHTISR CPPIFTIVLE WEKNETEIEI YETTNALHWE
1001: IDISRLYEGL EPNTNYRLVS MIGCVEEGEY ICMAYEKNRW VSRRHEASAE EVVGNWKSVV KICGERKIRS EVLFYEAVQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)