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AT1G65090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.722
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36100.1); Has 1435 Blast hits to 1033 proteins in 192 species: Archae - 0; Bacteria - 61; Metazoa - 511; Fungi - 123; Plants - 100; Viruses - 42; Other Eukaryotes - 598 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3X6eggNOG:ENOG410ZF20EMBL:AK175659EMBL:BT002830
EMBL:CP002684EnsemblPlants:AT1G65090EnsemblPlants:AT1G65090.1entrez:842817
ExpressionAtlas:Q84WS6GeneID:842817GO:GO:0016021Gramene:AT1G65090.1
hmmpanther:PTHR37198hmmpanther:PTHR37198:SF1HOGENOM:HOG000147090ncoils:Coil
PhylomeDB:Q84WS6Proteomes:UP000006548RefSeq:NP_176689.2STRING:3702.AT1G65090.2
TAIR:AT1G65090TMHMM:TMhelixUniGene:At.35924UniGene:At.35926
UniProt:Q84WS6
Coordinates (TAIR10) chr1:-:24181187..24182668
Molecular Weight (calculated) 26749.90 Da
IEP (calculated) 4.49
GRAVY (calculated) -0.87
Length 246 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQTMEEYQS NESEDKRSWI WSKAVSVGKK VLTAGVVVSS APLLVPSLFV ASTLAFLSSV PFCLFLANYA CTQKVMSTLL PDTEETGGVG KEDDDESGFD
101: EYSKIGHGEG AAGVGEAALF RGKEEPIPIQ VKEDEEMAKE STSLLEKIRD EGRTDKETSE RTLQDDKKSG NAKSEEVQEQ PEKREAPETR REGETGATKI
201: ETSTGKDDEE ISSNEPIDQA SGAQGTGEEK RKNTTKKKKK TGRAGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)