AT1G65080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain; FUNCTIONS IN: binding; INVOLVED IN: protein insertion into membrane; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Membrane insertion protein, OxaA/YidC (InterPro:IPR001708), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (TAIR:AT3G44370.1); Has 1367 Blast hits to 1362 proteins in 525 species: Archae - 4; Bacteria - 825; Metazoa - 205; Fungi - 148; Plants - 104; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:24176619..24180729 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58289.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.35 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 525 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVWRSCLRA SSSRHRLSSL FFSHHLKPSS FISHSPPLFS PSPSPSPTCF SPLHRLLSSG PEFPIGSQEI IPTDDSSLPV LAVVDFLEGF HEFTGLPWWM 101: IIASSTVAVR LALLPLLILQ LKKLKTISEL LPKLPMPIPE TPTLKGSIDQ FSHFLKESRA IGCPSFLWFF PYLSVQLPCF FLLMASIRKM SLDGHPGFDS 201: GGVLWFQNLS DLPGGSFGPV FPILIATFHY INIQISFDTS TIRQTTGLTG LLMRYYKLYL EILSVPLFFV GYAIPQGSLV YWVTNSSVNI FQQLSLKHPT 301: VGAKLGLLSQ GATPGMGHSM EISESVIKYV DSDSKEQTLS LQTLTPEELL SLSVQVLSKG DKETSIQLLR LALEKDPGYV RGLVLMGQAL LQKTQLSEAT 401: EYLELAISKL LDEDPSDAED VELLMLASQW AGAAYVQQGK LKSGIIHLER VAKLREPGDP KSKEHYFEAL LLLSSALYKE GQSDEAAKIL RVVVDHNPAY 501: KPLLEQCEDE NELVSDLVSR RKDHF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)