AT1G65020.1::SUBA5

AT1G65020.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?

Predictors

External Curations

AmiGO : endoplasmic reticulum 16618929
AmiGO : plasma membrane 17317660
TAIR : plasma membrane 17317660
TAIR : endoplasmic reticulum 16618929

Experimental Localisations and PPI

FP	MS/MS	PPI
	PMID:31932409 (2020): plastid PMID:31520498 (2020): mitochondrion PMID:30962257 (2019): plastid PMID:28865150 (2017): extracellular region plant-type cell wall PMID:22923678 (2012): endoplasmic reticulum PMID:19334764 (2009): plasma membrane PMID:17317660 (2007): plasma membrane PMID:16618929 (2006): endoplasmic reticulum	PMID:20706207 (2010): AT2G39800.1:None: PMID:20706207 (2010): AT4G38780.1:None: PMID:20706207 (2010): AT3G52090.1:None: PMID:20706207 (2010): AT5G20900.1:None:

SUBAcon links
AGI-AGI relationships

Coexpression	PPI
AT2G26990.1 nucleus [5.97] AT5G50870.1 cytosol [5.85] AT1G64520.1 cytosol, nucleus [5.77] AT3G60820.1 cytosol, nucleus [5.69] AT5G09900.1 cytosol, nucleus [5.44] AT5G16050.1 cytosol [5.44] AT2G03510.1 endoplasmic reticulum [5.42] AT2G26590.1 nucleus [5.42] AT4G31300.1 cytosol, nucleus [5.3] AT4G29040.1 cytosol, nucleus [5.18]	AT3G52090.1 nucleus AT4G38780.1 nucleus AT5G20900.1 nucleus AT2G39800.1 cytosol, plastid

Description (TAIR10)

protein_coding :

Curator
Summary (TAIR10)

Computational
Description (TAIR10)

FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

Protein Annotations

DNASU:842810	eggNOG:ENOG410IJPW	eggNOG:ENOG4111P1A	EMBL:BT015804
EMBL:BT020187	EMBL:CP002684	EnsemblPlants:AT1G65020	EnsemblPlants:AT1G65020.1
entrez:842810	GeneID:842810	GO:GO:0005783	GO:GO:0005886
Gramene:AT1G65020.1	hmmpanther:PTHR35287	HOGENOM:HOG000005892	IntAct:Q5XF12
InterPro:IPR011528	KEGG:ath:AT1G65020	OMA:QYTEILF	Pfam:PF08378
Pfscan:PS50965	PhylomeDB:Q5XF12	PROSITE:PS50965	Proteomes:UP000006548
RefSeq:NP_176682.1	TAIR:AT1G65020	UniGene:At.35936	UniProt:Q5XF12

Coordinates (TAIR10)

chr1:-:24154523..24156511

Molecular Weight (calculated)

35625.60 Da

IEP (calculated)

8.98

GRAVY (calculated)

-0.22

Length

319 amino acids

Sequence (TAIR10)
(BLAST)

001: MWIEIICGLV IYKLVRRFFY DDEFSDVETS DSTALFSVAH RLEKLYGGKA YVGLRIPDAD TASRQDIDVV LVTKGDVVVI SVKNLSGIVT VTSDGSWVCE
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA