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AT1G65000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.961
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38060.1); Has 49 Blast hits to 49 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1AFeggNOG:ENOG410YXMEEMBL:AK118039EMBL:BT004666EMBL:CP002684EnsemblPlants:AT1G65000EnsemblPlants:AT1G65000.1
entrez:842808GeneID:842808Gramene:AT1G65000.1hmmpanther:PTHR35106HOGENOM:HOG000240575IntAct:Q8GXU4KEGG:ath:AT1G65000
ncoils:CoilOMA:ASGCTTNPhylomeDB:Q8GXU4Proteomes:UP000006548RefSeq:NP_176680.2STRING:3702.AT1G65000.1TAIR:AT1G65000
UniGene:At.35940UniProt:Q8GXU4
Coordinates (TAIR10) chr1:+:24147156..24148373
Molecular Weight (calculated) 9752.25 Da
IEP (calculated) 5.62
GRAVY (calculated) -1.15
Length 83 amino acids
Sequence (TAIR10)
(BLAST)
1: MEKKEMEKLC QRCKQSYTDL SNETSSCRFH PSFFVCRRHD DQKRYYELKP DDPPYAAKFY DCCGAEDPNA PGCVTNPHIS YDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)