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AT1G64970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : gamma-tocopherol methyltransferase
Curator
Summary (TAIR10)
gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leaves
Computational
Description (TAIR10)
gamma-tocopherol methyltransferase (G-TMT); CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G73600.1); Has 14618 Blast hits to 14609 proteins in 2288 species: Archae - 408; Bacteria - 10917; Metazoa - 203; Fungi - 466; Plants - 497; Viruses - 0; Other Eukaryotes - 2127 (source: NCBI BLink).
Protein Annotations
BRENDA:2.1.1.95EC:2.1.1.95eggNOG:ENOG410XP5GeggNOG:KOG1269EMBL:AC006193EMBL:AF104220EMBL:AY049258
EMBL:AY087138EMBL:AY090280EMBL:CP002684EnsemblPlants:AT1G64970EnsemblPlants:AT1G64970.1entrez:842805Gene3D:3.40.50.150
GeneID:842805Genevisible:Q9ZSK1GO:GO:0008757GO:GO:0009507GO:GO:0010189GO:GO:0050342GO:GO:0051741
Gramene:AT1G64970.1gramene_pathway:2.1.1.95gramene_pathway:PWY-1422gramene_plant_reactome:1119287gramene_plant_reactome:6873809gramene_plant_reactome:6876561hmmpanther:PTHR10108
hmmpanther:PTHR10108:SF708HOGENOM:HOG000240556InParanoid:Q9ZSK1InterPro:IPR013216InterPro:IPR025774InterPro:IPR029063iPTMnet:Q9ZSK1
KEGG:ath:AT1G64970KO:K05928OMA:MHHGYYGPaxDb:Q9ZSK1Pfam:PF08241Pfam:Q9ZSK1Pfscan:PS51581
PhylomeDB:Q9ZSK1PIR:C96673PRIDE:Q9ZSK1PRO:PR:Q9ZSK1PROSITE:PS51581ProteinModelPortal:Q9ZSK1Proteomes:UP000006548
RefSeq:NP_176677.1SMR:Q9ZSK1STRING:3702.AT1G64970.1SUPFAM:SSF53335TAIR:AT1G64970tair10-symbols:G-TMTtair10-symbols:TMT1
tair10-symbols:VTE4UniGene:At.10960UniGene:At.46752UniPathway:UPA00160UniProt:Q9ZSK1
Coordinates (TAIR10) chr1:-:24134337..24135993
Molecular Weight (calculated) 38077.50 Da
IEP (calculated) 7.19
GRAVY (calculated) -0.16
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MKATLAAPSS LTSLPYRTNS SFGSKSSLLF RSPSSSSSVS MTTTRGNVAV AAAATSTEAL RKGIAEFYNE TSGLWEEIWG DHMHHGFYDP DSSVQLSDSG
101: HKEAQIRMIE ESLRFAGVTD EEEEKKIKKV VDVGCGIGGS SRYLASKFGA ECIGITLSPV QAKRANDLAA AQSLAHKASF QVADALDQPF EDGKFDLVWS
201: MESGEHMPDK AKFVKELVRV AAPGGRIIIV TWCHRNLSAG EEALQPWEQN ILDKICKTFY LPAWCSTDDY VNLLQSHSLQ DIKCADWSEN VAPFWPAVIR
301: TALTWKGLVS LLRSGMKSIK GALTMPLMIE GYKKGVIKFG IITCQKPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)