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AT1G64860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : sigma factor A
Curator
Summary (TAIR10)
Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme
Computational
Description (TAIR10)
sigma factor A (SIGA); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma subunit 2 (TAIR:AT1G08540.1); Has 23164 Blast hits to 23156 proteins in 2779 species: Archae - 0; Bacteria - 16620; Metazoa - 0; Fungi - 0; Plants - 234; Viruses - 18; Other Eukaryotes - 6292 (source: NCBI BLink).
Protein Annotations
BioGrid:28015eggNOG:COG0568eggNOG:ENOG410IH2CEMBL:AB004821
EMBL:AB019942EMBL:AC006193EMBL:AF015542EMBL:AF024590
EMBL:AF325036EMBL:AK316773EMBL:AY062526EMBL:AY093306
EMBL:CP002684EMBL:D89993EMBL:Y14252EMBL:Y14567
EnsemblPlants:AT1G64860EnsemblPlants:AT1G64860.1entrez:842794Gene3D:1.10.10.10
GeneID:842794Genevisible:O24629GO:GO:0001053GO:GO:0003677
GO:GO:0003700GO:GO:0006352GO:GO:0006355GO:GO:0009507
GO:GO:0016987GO:GO:0071461GO:GO:0071482GO:GO:0080005
GO:GO:2001141hmmpanther:PTHR30603hmmpanther:PTHR30603:SF14HOGENOM:HOG000242599
InParanoid:O24629IntAct:O24629InterPro:IPR000943InterPro:IPR007624
InterPro:IPR007627InterPro:IPR007630InterPro:IPR011991InterPro:IPR013324
InterPro:IPR013325InterPro:IPR014284iPTMnet:O24629KEGG:ath:AT1G64860
KO:K03086MINT:MINT-8294379OMA:KECLTWEPaxDb:O24629
Pfam:O24629Pfam:PF04539Pfam:PF04542Pfam:PF04545
PhylomeDB:O24629PIR:H96671PIR:T52642PRIDE:O24629
PRINTS:PR00046PRO:PR:O24629PROSITE:PS00715ProteinModelPortal:O24629
Proteomes:UP000006548RefSeq:NP_001185314.1RefSeq:NP_176666.1scanprosite:PS00715
SMR:O24629STRING:3702.AT1G64860.1SUPFAM:SSF88659SUPFAM:SSF88946
TAIR:AT1G64860tair10-symbols:RPOD1tair10-symbols:SIG1tair10-symbols:SIG2
tair10-symbols:SIGAtair10-symbols:SIGBTIGRfam:TIGR02937TIGRFAMs:TIGR02937
UniGene:At.25556UniProt:O24629
Coordinates (TAIR10) chr1:+:24098497..24100746
Molecular Weight (calculated) 56402.90 Da
IEP (calculated) 10.05
GRAVY (calculated) -0.46
Length 502 amino acids
Sequence (TAIR10)
(BLAST)
001: MATAAVIGLN TGKRLLSSSF YHSDVTEKFL SVNDHCSSQY HIASTKSGIT AKKASNYSPS FPSSNRHTQS AKALKESVDV ASTEKPWLPN GTDKELEEEC
101: YDDDDLISHS VEAILLLQKS MLEKSWNLSF EKAVSSEYPG KGTIRKKKIP VITCSGISAR QRRIGAKKKT NMTHVKAVSD VSSGKQVRGY VKGVISEDVL
201: SHVEVVRLSK KIKSGLRLDD HKSRLKDRLG CEPSDEQLAV SLKISRAELQ AWLMECHLAR EKLAMSNVRL VMSIAQRYDN LGAEMSDLVQ GGLIGLLRGI
301: EKFDSSKGFR ISTYVYWWIR QGVSRALVDN SRTLRLPTHL HERLGLIRNA KLRLQEKGIT PSIDRIAESL NMSQKKVRNA TEAVSKVFSL DRDAFPSLNG
401: LPGETHHSYI ADTRLENNPW HGYDDLALKE EVSKLISATL GEREKEIIRL YYGLDKECLT WEDISKRIGL SRERVRQVGL VALEKLKHAA RKRKMEAMIL
501: KN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)