suba logo
AT1G64810.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17562072 (2007): plastid plastid stroma
  • PMID:15494558 (2004): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Arabidopsis thaliana protein of unknown function (DUF794)
Curator
Summary (TAIR10)
chloroplast APO1
Computational
Description (TAIR10)
ACCUMULATION OF PHOTOSYSTEM ONE 1 (APO1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF794, plant (InterPro:IPR008512); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF794) (TAIR:AT5G57930.2); Has 142 Blast hits to 119 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEP8eggNOG:ENOG410XP6UEMBL:AC006193EMBL:AY466161
EMBL:CP002684EnsemblPlants:AT1G64810EnsemblPlants:AT1G64810.1entrez:842789
ExpressionAtlas:Q9XIR4GeneID:842789Genevisible:Q9XIR4GO:GO:0003723
GO:GO:0009507hmmpanther:PTHR10388hmmpanther:PTHR10388:SF5HOGENOM:HOG000239455
InParanoid:Q9XIR4InterPro:IPR023342PaxDb:Q9XIR4Pfam:PF05634
Pfam:Q9XIR4Pfscan:PS51499PhylomeDB:Q9XIR4PIR:C96671
PRIDE:Q9XIR4PRO:PR:Q9XIR4PROSITE:PS51499ProteinModelPortal:Q9XIR4
Proteomes:UP000006548RefSeq:NP_176661.1STRING:3702.AT1G64810.2TAIR:AT1G64810
tair10-symbols:APO1UniGene:At.28084UniProt:Q0WUT5UniProt:Q9XIR4
Coordinates (TAIR10) chr1:+:24086882..24088276
Molecular Weight (calculated) 49629.50 Da
IEP (calculated) 9.47
GRAVY (calculated) -0.43
Length 436 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLVSPACRG VYLQTIDPKP IDFSARASYA LCFQIPTSIP KRECLMRLGT VFCFNQKHRE QTSFKKRYVS TQNVDLPPIL PKNKKKPYPI PFKQIQEEAR
101: KDKKLAQMGI EKQLDPPKNG LLVPNLVPVA DQVIDNWKLL IKGLAQLLHV VPVFACSECG AVHVANVGHN IRDCNGPTNS QRRGSHSWVK GTINDVLIPV
201: ESYHMYDPFG RRIKHETRFE YERIPALVEL CIQAGVEIPE YPCRRRTQPI RMMGKRVIDR GGYHKEPEKP QTSSSLSSPL AELDTLGVFE RYPPPTPEDI
301: PKIAQETMDA YEKVRLGVTK LMRKFTVKAC GYCSEVHVGP WGHSVKLCGE FKHQWRDGKH GWQDALVDEV FPPNYVWHVR DLKGNPLTGN LRRFYGKAPA
401: LVEICMHSGA RVPQRYKAMM RLDIIVPDSQ EADMVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)