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AT1G64770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NDH-dependent cyclic electron flow 1
Curator
Summary (TAIR10)
encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.
Computational
Description (TAIR10)
NDH-dependent cyclic electron flow 1 (NDF2); FUNCTIONS IN: carbohydrate binding, catalytic activity; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013); BEST Arabidopsis thaliana protein match is: NDH-dependent cyclic electron flow 5 (TAIR:AT1G55370.2); Has 82 Blast hits to 81 proteins in 22 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 5; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVH4eggNOG:ENOG410YEUYEMBL:AC006193EMBL:AY045871EMBL:AY085928EMBL:AY113953EMBL:CP002684
EnsemblPlants:AT1G64770EnsemblPlants:AT1G64770.1entrez:842785ExpressionAtlas:Q94AQ8Gene3D:2.70.98.10GeneID:842785Genevisible:Q94AQ8
GO:GO:0003824GO:GO:0005975GO:GO:0006810GO:GO:0009534GO:GO:0009535GO:GO:0009773GO:GO:0010598
GO:GO:0030246hmmpanther:PTHR11122hmmpanther:PTHR11122:SF18HOGENOM:HOG000006108InterPro:IPR011013InterPro:IPR014718PaxDb:Q94AQ8
Pfam:Q94AQ8PhylomeDB:Q94AQ8PIR:H96670PRIDE:Q94AQ8PRO:PR:Q94AQ8ProteinModelPortal:Q94AQ8Proteomes:UP000006548
RefSeq:NP_564840.1STRING:3702.AT1G64770.3SUPFAM:SSF74650TAIR:AT1G64770tair10-symbols:NDF2tair10-symbols:NDH45UniGene:At.14806
UniProt:Q94AQ8
Coordinates (TAIR10) chr1:+:24057549..24059415
Molecular Weight (calculated) 38007.60 Da
IEP (calculated) 6.77
GRAVY (calculated) -0.21
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLISFSLL PKPKAVRSSI SAPQTQTINT EKLEDKFGRK GIKFSESNNI PMVELKVRNG SSLKLSLSDA HVLSYKPKVY WKDEGFEEVL YTVDGDESRG
101: GVGVVIVNGE EPKGGSSVIS GCDWSVKDTD SDAIDALQIE LSCTAGVLDI TYIVSLYPVS MATALVVKNN GRKPVTLKPG IMSYLRFKKR SGAGIQGLKG
201: CSYCPNPPLS SPFELLSPSE AMKAESSGWF GSEEGEKPGI WAVEDSVITL LEKKMSRIYG APPAERLKAV YNTPPSKFET IDQGRGLFFR MIRIGFEEMY
301: VGSPGSMWDK YGKQHYFVCT GPTSMLVPVD VASGETWRGA MVIEHDNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)