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AT1G64740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha-1 tubulin
Curator
Summary (TAIR10)
alpha-tubulin expressed primarily in stamens and mature pollen
Computational
Description (TAIR10)
alpha-1 tubulin (TUA1); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule cytoskeleton, cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-5 (TAIR:AT5G19780.1); Has 22728 Blast hits to 22623 proteins in 4697 species: Archae - 12; Bacteria - 27; Metazoa - 4402; Fungi - 13423; Plants - 1534; Viruses - 0; Other Eukaryotes - 3330 (source: NCBI BLink).
Protein Annotations
BioGrid:28003eggNOG:COG5023eggNOG:KOG1376EMBL:AC006193EMBL:AY059728EMBL:AY091372EMBL:CP002684
EMBL:M21414EnsemblPlants:AT1G64740EnsemblPlants:AT1G64740.1entrez:842782Gene3D:1.10.287.600Gene3D:3.30.1330.20Gene3D:3.40.50.1440
GeneID:842782Genevisible:P11139GO:GO:0003924GO:GO:0005200GO:GO:0005525GO:GO:0005829GO:GO:0005874
GO:GO:0005886GO:GO:0007017Gramene:AT1G64740.1hmmpanther:PTHR11588hmmpanther:PTHR11588:SF48HOGENOM:HOG000165711InParanoid:P11139
InterPro:IPR000217InterPro:IPR002452InterPro:IPR003008InterPro:IPR008280InterPro:IPR013838InterPro:IPR017975InterPro:IPR018316
InterPro:IPR023123iPTMnet:P11139KEGG:ath:AT1G64740KO:K07374ncoils:CoilOMA:DDDTHEYPANTHER:PTHR11588
PaxDb:P11139Pfam:P11139Pfam:PF00091Pfam:PF03953PhylomeDB:P11139PIR:JA0062PRIDE:P11139
PRINTS:PR01161PRINTS:PR01162PRO:PR:P11139PROSITE:PS00227ProteinModelPortal:P11139Proteomes:UP000006548RefSeq:NP_176654.1
scanprosite:PS00227scanprosite:PS00228SMART:SM00864SMART:SM00865SMR:P11139STRING:3702.AT1G64740.1SUPFAM:SSF52490
SUPFAM:SSF55307TAIR:AT1G64740tair10-symbols:TUA1UniGene:At.27012UniGene:At.328UniProt:P11139
Coordinates (TAIR10) chr1:+:24050114..24052296
Molecular Weight (calculated) 49802.80 Da
IEP (calculated) 4.68
GRAVY (calculated) -0.19
Length 450 amino acids
Sequence (TAIR10)
(BLAST)
001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGTMPSDS TVGACHDAFN TFFSETSSGQ HVPRAVFLDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GREIVDTCLE RLRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD FGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: VVLLDNEAIY DICRRSLDIE RPTYSNLNRL ISQTISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISSAK AYHEQFSVPE ITTSVFEPSN
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNT AVAAIKAKRT IQFVDWCPTG FKCGINYQPP SVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYS
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGGEGA EDDDEEGDEY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)