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AT1G64720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.992
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polyketide cyclase/dehydrase and lipid transport superfamily protein
Curator
Summary (TAIR10)
membrane related protein CP5
Computational
Description (TAIR10)
CP5; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT5G54170.1); Has 365 Blast hits to 364 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IPBWeggNOG:ENOG41100AYEMBL:AC006193EMBL:CP002684EnsemblPlants:AT1G64720EnsemblPlants:AT1G64720.1entrez:842780
Gene3D:3.30.530.20GeneID:842780GO:GO:0005773GO:GO:0008289GO:GO:0016021Gramene:AT1G64720.1hmmpanther:PTHR19308
hmmpanther:PTHR19308:SF12InterPro:IPR002913InterPro:IPR023393KEGG:ath:AT1G64720OMA:SHCAFMAPfam:PF01852Pfscan:PS50848
PhylomeDB:Q9XIR9PIR:D96670PROSITE:PS50848Proteomes:UP000006548RefSeq:NP_176653.1SMR:Q9XIR9STRING:3702.AT1G64720.1
SUPFAM:SSF55961TAIR:AT1G64720tair10-symbols:CP5TMHMM:TMhelixUniGene:At.24040UniGene:At.28546UniGene:At.74749
UniProt:Q9XIR9
Coordinates (TAIR10) chr1:-:24046887..24048537
Molecular Weight (calculated) 43760.00 Da
IEP (calculated) 9.68
GRAVY (calculated) -0.21
Length 385 amino acids
Sequence (TAIR10)
(BLAST)
001: MMGLSSLVFT EFHSLGFSDL IVFVAPLWIA VAAGVLVGWV WRPKWAYLDS KLLSNSPKFL NLQLPTSILK TSSHHVNPSL SSKEKTGFVT DDDFRHLWKL
101: VEVKDGGPCW IQMMDRSTPT FSYQAWRRDP ENGPPQYRSR TVFEDATPEM VRDFFWDDEF RSKWDDMLLY SSTLERCKDT GTMVVQWVRK FPFFCSDREY
201: IIGRRIWDAG RVFYCITKGV QYPSVPRQNK PRRVDLYYSS WCIRAVESKR GDGEMTSCEV LLFHHEDMGI PWEIAKLGVR QGMWGAVKKI EPGLRAYQRA
301: KAAGAGLSPS AIMAHINTKV SAEEFMNERG SIAEVTGDKP TGKNIPKILV VGGAIALACT LDKGLLTKAV IFGVARRFAR MGKRM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)