AT1G64690.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : branchless trichome | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes BRANCHLESS TRICHOME (BLT) involved in trichome development. A large portion of the internal amino acid sequence of BLT is predicted to form a coiled-coil domain. BLT mutants form branchless trichomes with blunt tips. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
BRANCHLESS TRICHOME (BLT); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50660.1); Has 8499 Blast hits to 5324 proteins in 475 species: Archae - 37; Bacteria - 382; Metazoa - 3924; Fungi - 509; Plants - 391; Viruses - 45; Other Eukaryotes - 3211 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:24038069..24038890 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32600.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.05 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.06 | ||||||||||||||||||||||||||||||||||||||||
| Length | 273 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKDMKMQSSP ETMMTRIPTP DPHSTGVRED AMDSVCKPWK LYENPYYCSS QSQQHQHQRK AFIWDLNFIK VFMESELGKA QDEIKELKAE LDYERKARRR 101: AELMIKKLAK DVEEERMARE AEEMQNKRLF KELSSEKSEM VRMKRDLEEE RQMHRLAEVL REERVQMKLM DARLFLEEKL SELEEANRQG ERERNRMMKP 201: KILERACSSP ARRRCENPQI KRGINPFPRV MRAIRSKSEK WGSKLECQKV QLKILLRQKT TPRCTPLLSS PPP |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)