AT1G64610.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G42010.1); Has 30640 Blast hits to 19025 proteins in 661 species: Archae - 60; Bacteria - 4919; Metazoa - 11746; Fungi - 6735; Plants - 3556; Viruses - 0; Other Eukaryotes - 3624 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:23998920..24001297 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72308.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.44 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||
| Length | 647 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGTPGDEEDE DRFFDAPEVV SDDFGLHLWT STPESVSTRR RKFLQSMGLS FKKTATDDDS EDELEPSHTD SNVVSEVVNV SSGVKEIDLL VRNESTTSSG 101: FDVSSVSSSD TDDQTLLARN DASSSTSTMP GGLSESSSSK SGSFGDFHNS PFSQRDDLLK KGAKSWLKKL GVLTHVLESM DCESVRTQLH QVARVQTHKK 201: QFKELSSMCI DQEFSAHDGS ILAMKFSPDG KYIASAGEDC VVRVWSITEE ERTDTYEVAE VDSGVYFGMN QRSQIEPLKI NNEKTEKKSS FLRKSSDSTC 301: VVLPPTIFSI SEKPLHEFKG HIGEILDLSW SEKGYLLSSS VDETVRLWRV GCDECLRTFT HNNFVTCVAF NPVDDNYFIS GSIDGKVRIW DVTRCRVVDY 401: TDIRDIVTAV CYRPDAKGAV IGSMTGNCRF YHIFENQLQM DQEINVHGKK KVASKRISGL QYLPSDSDSD KVMVTSADSQ IRIICGEDVI CKLKASSLRT 501: TSASFISDGK HIISTSEDSY INVWSYSQLP SKKPYSETPK SIRSYEGFLS HNASVAIPWL RQGRRDGLSE CITDLDMKIP KVDCFSPMKG STTWPEEKLE 601: DVAMSNRGKL KLLRSAWQPH LWGLVIVTAT WDGRIRVFHN YGLPIRV |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)