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AT1G64610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G42010.1); Has 30640 Blast hits to 19025 proteins in 661 species: Archae - 60; Bacteria - 4919; Metazoa - 11746; Fungi - 6735; Plants - 3556; Viruses - 0; Other Eukaryotes - 3624 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQPJeggNOG:KOG0283EMBL:AY064059EMBL:AY096369EMBL:CP002684EnsemblPlants:AT1G64610EnsemblPlants:AT1G64610.1
EnsemblPlants:AT1G64610.2entrez:842769Gene3D:2.130.10.10GeneID:842769Gramene:AT1G64610.1Gramene:AT1G64610.2hmmpanther:PTHR14221
hmmpanther:PTHR14221:SF5HOGENOM:HOG000239143InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR020472KEGG:ath:AT1G64610
OMA:VICKLKAPfam:PF00400Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q8VZK1PRINTS:PR00320PROSITE:PS50082
PROSITE:PS50294Proteomes:UP000006548RefSeq:NP_176642.1RefSeq:NP_974089.1SMART:SM00320SMR:Q8VZK1STRING:3702.AT1G64610.1
SUPFAM:SSF50978TAIR:AT1G64610UniGene:At.27085UniProt:Q8VZK1
Coordinates (TAIR10) chr1:-:23998920..24001297
Molecular Weight (calculated) 72308.80 Da
IEP (calculated) 5.44
GRAVY (calculated) -0.44
Length 647 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTPGDEEDE DRFFDAPEVV SDDFGLHLWT STPESVSTRR RKFLQSMGLS FKKTATDDDS EDELEPSHTD SNVVSEVVNV SSGVKEIDLL VRNESTTSSG
101: FDVSSVSSSD TDDQTLLARN DASSSTSTMP GGLSESSSSK SGSFGDFHNS PFSQRDDLLK KGAKSWLKKL GVLTHVLESM DCESVRTQLH QVARVQTHKK
201: QFKELSSMCI DQEFSAHDGS ILAMKFSPDG KYIASAGEDC VVRVWSITEE ERTDTYEVAE VDSGVYFGMN QRSQIEPLKI NNEKTEKKSS FLRKSSDSTC
301: VVLPPTIFSI SEKPLHEFKG HIGEILDLSW SEKGYLLSSS VDETVRLWRV GCDECLRTFT HNNFVTCVAF NPVDDNYFIS GSIDGKVRIW DVTRCRVVDY
401: TDIRDIVTAV CYRPDAKGAV IGSMTGNCRF YHIFENQLQM DQEINVHGKK KVASKRISGL QYLPSDSDSD KVMVTSADSQ IRIICGEDVI CKLKASSLRT
501: TSASFISDGK HIISTSEDSY INVWSYSQLP SKKPYSETPK SIRSYEGFLS HNASVAIPWL RQGRRDGLSE CITDLDMKIP KVDCFSPMKG STTWPEEKLE
601: DVAMSNRGKL KLLRSAWQPH LWGLVIVTAT WDGRIRVFHN YGLPIRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)