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AT1G64550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.993
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:24872594 (2014): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : general control non-repressible 3
Curator
Summary (TAIR10)
member of GCN subfamily
Computational
Description (TAIR10)
general control non-repressible 3 (GCN3); FUNCTIONS IN: transporter activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT5G60790.1); Has 474431 Blast hits to 318649 proteins in 3825 species: Archae - 8686; Bacteria - 390426; Metazoa - 7720; Fungi - 5127; Plants - 4044; Viruses - 51; Other Eukaryotes - 58377 (source: NCBI BLink).
Protein Annotations
BioGrid:27984eggNOG:COG0488eggNOG:KOG0062EMBL:AC009519EMBL:BT002015EMBL:BT010544EMBL:CP002684
EnsemblPlants:AT1G64550EnsemblPlants:AT1G64550.1entrez:842763Gene3D:3.40.50.300GeneID:842763Genevisible:Q8H0V6GO:GO:0005215
GO:GO:0005524GO:GO:0005829GO:GO:0016887GO:GO:0042742GO:GO:0046686Gramene:AT1G64550.1hmmpanther:PTHR19211
hmmpanther:PTHR19211:SF45HOGENOM:HOG000271637InParanoid:Q8H0V6InterPro:IPR003439InterPro:IPR003593InterPro:IPR017871InterPro:IPR027417
InterPro:IPR032781iPTMnet:Q8H0V6KEGG:ath:AT1G64550KO:K06158OMA:FLADFPNPaxDb:Q8H0V6Pfam:PF00005
Pfam:PF12848Pfam:Q8H0V6Pfscan:PS50893PhylomeDB:Q8H0V6PIR:A96669PRIDE:Q8H0V6PRO:PR:Q8H0V6
PROSITE:PS00211PROSITE:PS50893ProteinModelPortal:Q8H0V6Proteomes:UP000006548RefSeq:NP_176636.1scanprosite:PS00211SMART:SM00382
SMR:Q8H0V6STRING:3702.AT1G64550.1SUPFAM:SSF52540TAIR:AT1G64550tair10-symbols:ATGCN3tair10-symbols:GCN3UniGene:At.42980
UniProt:Q8H0V6
Coordinates (TAIR10) chr1:+:23968850..23973369
Molecular Weight (calculated) 79648.40 Da
IEP (calculated) 5.97
GRAVY (calculated) -0.29
Length 715 amino acids
Sequence (TAIR10)
(BLAST)
001: MTEVASSVVY EVLGRRAQDV DEPIMDYIIN VLADEDFDFG EEGEGAFDAV GELLVAAECV SDFEECRLVC SKLSDKFGKH GLVKPTPTVR SLAMPVRMND
101: GMDDGPVKKK KPEPVDGPLL TERDLAKIER RKKKDDRQRE LQYQQHVAEM EAAKAGMPTV SVNHDTGGGS AIRDIHMDNF NVSVGGRDLI VDGSITLSFG
201: RHYGLVGRNG TGKTTFLRYM AMHAIEGIPT NCQILHVEQE VVGDKTTALQ CVLNTDIERT KLLEEEIQIL AKQRETEEPT AKDGMPTKDT VEGDLMSQRL
301: EEIYKRLDAI DAYTAEARAA SILAGLSFTP EMQLKATNTF SGGWRMRIAL ARALFIEPDL LLLDEPTNHL DLHAVLWLET YLTKWPKTFI VVSHAREFLN
401: TVVTDIIHLQ NQKLSTYKGN YDIFERTREE QVKNQQKAFE SSERSRSHMQ AFIDKFRYNA KRASLVQSRI KALDRLAHVD QVINDPDYKF EFPTPDDKPG
501: PPIISFSDAS FGYPGGPLLF RNLNFGIDLD SRIAMVGPNG IGKSTILKLI SGDLQPSSGT VFRSAKVRVA VFSQHHVDGL DLSSNPLLYM MRCYPGVPEQ
601: KLRSHLGSLG VTGNLALQPM YTLSGGQKSR VAFAKITFKK PHLLLLDEPS NHLDLDAVEA LIQGLVLFQG GICMVSHDEH LISGSVDELW VVSDGRIAPF
701: HGTFHDYKKL LQSST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)