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AT1G64450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.400
extracellular 0.272
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycine-rich protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycine-rich protein family; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT4G23930.1); Has 61689 Blast hits to 17372 proteins in 1170 species: Archae - 25; Bacteria - 6104; Metazoa - 45491; Fungi - 2077; Plants - 2819; Viruses - 1028; Other Eukaryotes - 4145 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J5Q7eggNOG:ENOG410XWH5EMBL:AC009519EMBL:AC066689EMBL:AK227872EMBL:BT010542EMBL:CP002684
EnsemblPlants:AT1G64450EnsemblPlants:AT1G64450.1entrez:842753GeneID:842753GO:GO:0016021Gramene:AT1G64450.1hmmpanther:PTHR31852
hmmpanther:PTHR31852:SF22HOGENOM:HOG000153464KEGG:ath:AT1G64450OMA:SHYDSSIPhylomeDB:Q9SGW9PIR:E96668Proteomes:UP000006548
RefSeq:NP_176626.1TAIR:AT1G64450TMHMM:TMhelixUniGene:At.36000UniProt:Q9SGW9
Coordinates (TAIR10) chr1:-:23941758..23942786
Molecular Weight (calculated) 35892.80 Da
IEP (calculated) 9.54
GRAVY (calculated) -0.14
Length 342 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKPHDRRRS SGRTNLASCA VATVFLLILL VVLLVVYFTV FKPKDPKISV NAVQLPSFAV SNNTANFSFS QYVAVRNPNR AVFSHYDSSI QLLYSGNQVG
101: FMFIPAGKID SGRIQYMAAT FTVHSFPISP PSSSAISTVS AAVIPDSPII PGPPDFTVTP RNPDSPYFPG YPESPDLPGN PGSPDFSGNP GPPSFPRNPG
201: SPEFPGNPGA PIIPRNPGSP EFPINPPRNP GAPVIPRNPN PPVFPGNPRS MGPPGFPGIG GPPGFPGTPF GGGGTGPTLG DGYANPGFGY GNRVGPTMEI
301: ESKMELAGRV KVLHVFTHHV VAKSDCRVTV SIADGSVLGF HC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)