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AT1G64320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.804
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myosin heavy chain-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G41780.1); Has 120676 Blast hits to 61544 proteins in 2785 species: Archae - 1971; Bacteria - 17622; Metazoa - 55572; Fungi - 10250; Plants - 6487; Viruses - 441; Other Eukaryotes - 28333 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JAU4eggNOG:ENOG410ZQSMEMBL:AC066689EMBL:CP002684EnsemblPlants:AT1G64320EnsemblPlants:AT1G64320.1entrez:842738
GeneID:842738GO:GO:0046686Gramene:AT1G64320.1hmmpanther:PTHR18937hmmpanther:PTHR18937:SF216HOGENOM:HOG000090383KEGG:ath:AT1G64320
ncoils:CoilOMA:DHIRILYPhylomeDB:Q9C7V6PIR:B96667Proteomes:UP000006548RefSeq:NP_176614.1SMR:Q9C7V6
TAIR:AT1G64320UniGene:At.66095UniProt:Q9C7V6
Coordinates (TAIR10) chr1:+:23869036..23870548
Molecular Weight (calculated) 55491.70 Da
IEP (calculated) 6.98
GRAVY (calculated) -0.97
Length 476 amino acids
Sequence (TAIR10)
(BLAST)
001: MKATESKQLG EKNKGLRSQI SGLESVLKEK GDEISTLVNK FGNSELGLTS RIEDLKCQLK NLEQEIGFLR ARNAGLAGNL EVTKVEEKER VKGLMDQVNG
101: MKHELESLRS QKDESEAKLE KKVEEVTETK MQLKSLKEET EEERNRLSEE IDQLKGENQM LHRRISELDS LHMEMKTKSA HEMEDASKKL DTEVSDQKKL
201: VKEQDDIIRR LSAKIKDQQR LLKEQKDTID KFAEDQKQSK RWSFGSSRDL KLNPNALERK MEELAEDFRM KIEDHIRILY RRIHVAEQIH LESKNEYIKT
301: RDMLKENKEN RESLMFFETQ FNKMKDALEK GYTGSETAMK KLEEAEEVTN RVARIGKEME SAKLWVSEKK SEVETLTAKL ECSEAQETLL KEKLSKLEKK
401: LAEEGTEKLK LAKVLSKFET RIKELEVKVK GREVELLSLG EEKREAIRQL CILVDYHQDR YNQLKKSILK VDDLKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)