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AT1G64230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.963
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-conjugating enzyme 28
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ubiquitin-conjugating enzyme 28 (UBC28); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 8 (TAIR:AT5G41700.5); Has 10654 Blast hits to 10613 proteins in 404 species: Archae - 0; Bacteria - 4; Metazoa - 4603; Fungi - 2343; Plants - 1945; Viruses - 27; Other Eukaryotes - 1732 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G64230-MONOMERBioCyc:ARA:GQT-1299-MONOMERBioCyc:ARA:GQT-1300-MONOMERBioCyc:ARA:GQT-1301-MONOMERBioCyc:ARA:GQT-1302-MONOMERBioGrid:27949EC:2.3.2.23
eggNOG:COG5078eggNOG:KOG0417EMBL:AC007764EMBL:AF385718EMBL:AF480945EMBL:AY133670EMBL:CP002684
EMBL:DQ027041EnsemblPlants:AT1G64230EnsemblPlants:AT1G64230.1EnsemblPlants:AT1G64230.2entrez:842728ExpressionAtlas:Q94F47Gene3D:3.10.110.10
GeneID:842728Genevisible:Q94F47GO:GO:0005524GO:GO:0016567GO:GO:0016740hmmpanther:PTHR24068HOGENOM:HOG000233455
InParanoid:Q94F47InterPro:IPR000608InterPro:IPR016135InterPro:IPR023313KEGG:ath:AT1G64230KO:K06689PaxDb:Q94F47
Pfam:PF00179Pfam:Q94F47Pfscan:PS50127PhylomeDB:Q94F47PIR:D96666PRIDE:Q94F47PRO:PR:Q94F47
PROSITE:PS00183PROSITE:PS50127ProteinModelPortal:Q94F47Proteomes:UP000006548Reactome:R-ATH-174184Reactome:R-ATH-179409RefSeq:NP_001031228.1
RefSeq:NP_564828.1scanprosite:PS00183SMR:Q94F47STRING:3702.AT5G53300.1SUPFAM:SSF54495TAIR:AT1G64230tair10-symbols:UBC28
UniGene:At.24180UniPathway:UPA00143UniProt:Q94F47
Coordinates (TAIR10) chr1:+:23833792..23835220
Molecular Weight (calculated) 16510.90 Da
IEP (calculated) 8.07
GRAVY (calculated) -0.31
Length 148 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)