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AT1G64200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : vacuolar H+-ATPase subunit E isoform 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
vacuolar H+-ATPase subunit E isoform 3 (VHA-E3); FUNCTIONS IN: proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole, mitochondrial proton-transporting ATP synthase complex; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1/A1 complex, subunit E (InterPro:IPR002842); BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit E1 (TAIR:AT4G11150.1); Has 792 Blast hits to 792 proteins in 304 species: Archae - 92; Bacteria - 13; Metazoa - 250; Fungi - 149; Plants - 127; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).
Protein Annotations
BioGrid:27946eggNOG:COG1390eggNOG:KOG1664EMBL:AC007764
EMBL:CP002684EMBL:EF182846EnsemblPlants:AT1G64200EnsemblPlants:AT1G64200.1
entrez:842725GeneID:842725Genevisible:P0CAN7GO:GO:0005773
GO:GO:0005774GO:GO:0015991GO:GO:0033178GO:GO:0046961
Gramene:AT1G64200.1HAMAP:MF_00311hmmpanther:PTHR12317hmmpanther:PTHR12317:SF18
HOGENOM:HOG000202506InParanoid:P0CAN7InterPro:IPR002842KEGG:ath:AT1G64200
KO:K02150ncoils:CoilOMA:SGNQRIKPaxDb:P0CAN7
Pfam:P0CAN7Pfam:PF01991PhylomeDB:P0CAN7PIR:C96666
PRIDE:P0CAN7PRO:PR:P0CAN7ProteinModelPortal:P0CAN7Proteomes:UP000006548
Reactome:R-ATH-77387Reactome:R-ATH-917977RefSeq:NP_176602.1SMR:P0CAN7
STRING:3702.AT1G64200.1SUPFAM:0053834TAIR:AT1G64200tair10-symbols:VHA-E3
TCDB:3.A.2.2.5UniGene:At.52357UniProt:P0CAN7
Coordinates (TAIR10) chr1:-:23828537..23830002
Molecular Weight (calculated) 27086.60 Da
IEP (calculated) 6.11
GRAVY (calculated) -0.50
Length 237 amino acids
Sequence (TAIR10)
(BLAST)
001: MNDADASIQI QQMVRFIRQE AEEKANEISI SSEEEFNIEK LQLVEAEKKK IRQEYEKKEK QVDVRKKIDY SMQLNASRIK VLQAQDDIVN AMKEEAAKQL
101: LKVSQHGFFN HHHHQYKHLL KDLIVQCLLR LKEPAVLLRC REEDLDIVES MLDDASEEYC KKAKVHAPEI IVDKDIFLPP APSDDDPHAL SCAGGVVLAS
201: RDGKIVCENT LDARLEVAFR NKLPEIRKSL FGKVGAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)