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AT1G63980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : D111/G-patch domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); Has 18077 Blast hits to 9113 proteins in 508 species: Archae - 9; Bacteria - 1331; Metazoa - 6165; Fungi - 2709; Plants - 1373; Viruses - 248; Other Eukaryotes - 6242 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111IXKeggNOG:KOG2809EMBL:AY054272EMBL:BT002689EMBL:CP002684EnsemblPlants:AT1G63980EnsemblPlants:AT1G63980.1
entrez:842701ExpressionAtlas:Q940M0GeneID:842701GO:GO:0003676Gramene:AT1G63980.1hmmpanther:PTHR23149hmmpanther:PTHR23149:SF9
HOGENOM:HOG000029683InterPro:IPR000467OMA:AGCYFEGPfam:PF01585Pfscan:PS50174PhylomeDB:Q940M0PROSITE:PS50174
Proteomes:UP000006548RefSeq:NP_564820.1SMART:SM00443STRING:3702.AT1G63980.1TAIR:AT1G63980UniGene:At.21487UniProt:Q940M0
Coordinates (TAIR10) chr1:+:23740646..23743054
Molecular Weight (calculated) 43440.80 Da
IEP (calculated) 4.96
GRAVY (calculated) -0.98
Length 391 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAPEAPVKY VGICKDSAAF KLMKSMGWEE GEGLGKDKQG IKGYVRVTNK QDTSGVGLDK PNPWAFDTTQ FDNILKKLKV QAAPTKTSKN DDDSDKEDES
101: EDDAVKSEPA KLKTVAKVTR PQGRYKRREK GKLVNSYSSK DLEGILVKRT EDPSPAVCDI ADSMDIEIIS EDQDASIKEQ KIEEPSSNWW GFKSGFVSGG
201: LLGAKSGKKK LKASERKMFS ENDQENLYNM VQDKATAGKQ GLGIKDRPKK IAGVRYEGKK TSFDNSDDDD DDDDDDDEED EEEDEDESEA DDDDKDSVIE
301: SSLPAKRKHD EIIEPKIKLK NLCKQIVKKD AGKGGFMKLK QLKSLIDEQA PSVLSEFSSR KDAIAYLKLK LERSGKFVVE GKKISLVSSK K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)