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AT1G63930.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.896
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : from the Czech 'roh' meaning 'corner'
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
from the Czech 'roh' meaning 'corner' (ROH1); CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT4G23530.1); Has 150 Blast hits to 147 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 1; Plants - 145; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFFSeggNOG:ENOG410Y9SHEMBL:AC010852EMBL:AK221458EMBL:BT023455EMBL:BT029011EMBL:CP002684
EnsemblPlants:AT1G63930EnsemblPlants:AT1G63930.1entrez:842696GeneID:842696GO:GO:0010214GO:GO:0048354Gramene:AT1G63930.1
hmmpanther:PTHR31509hmmpanther:PTHR31509:SF7HOGENOM:HOG000241140IntAct:Q9CAK4InterPro:IPR008511KEGG:ath:AT1G63930OMA:AEMAEIC
Pfam:PF05633PhylomeDB:Q9CAK4PIR:D96664Proteomes:UP000006548RefSeq:NP_176576.1STRING:3702.AT1G63930.1TAIR:AT1G63930
tair10-symbols:ROH1UniGene:At.52351UniProt:Q9CAK4
Coordinates (TAIR10) chr1:+:23727927..23729174
Molecular Weight (calculated) 45640.00 Da
IEP (calculated) 7.01
GRAVY (calculated) -0.29
Length 415 amino acids
Sequence (TAIR10)
(BLAST)
001: MRPAQDNQGS FLGRISIRRN QFVDVNNEQE QEDLELFQKH IADRFTELLS PPQPPPSDEI NTVASVAATE QIMSVTWLRK LMDVFLCCEA EFKAILLMGR
101: DPTQISKPPF DRLVPEMLDR SIKALDICTA VVNGIDSVRH YQRLAEIAVT ALEQRPLGDG NVRRAKRALA NLVVALSLED KENVSGGGGG GGGGNKTTER
201: SWSFGRRSGG SSAASKGGAT IGQLKSSSWA VGRNWSAAKQ IHAMTANLTP PRGNEAAGLP QPMFIMSTVM VFVMWVLTAA VPCQERSGLA NHLPVPPKHL
301: NWAQSLIGIH EKIGDEWKKK EKKGSAGLME EMTRMEKLGH SLMEFADGFH YPAEKDAAES AAVQVAEMAE ICRRMEEELV PLQQQIREVF HRIVRSRAEI
401: LEVLEQAGKV SAPVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)