AT1G63930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.896 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : from the Czech 'roh' meaning 'corner' | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
from the Czech 'roh' meaning 'corner' (ROH1); CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT4G23530.1); Has 150 Blast hits to 147 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 1; Plants - 145; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:23727927..23729174 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45640.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.01 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||
| Length | 415 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRPAQDNQGS FLGRISIRRN QFVDVNNEQE QEDLELFQKH IADRFTELLS PPQPPPSDEI NTVASVAATE QIMSVTWLRK LMDVFLCCEA EFKAILLMGR 101: DPTQISKPPF DRLVPEMLDR SIKALDICTA VVNGIDSVRH YQRLAEIAVT ALEQRPLGDG NVRRAKRALA NLVVALSLED KENVSGGGGG GGGGNKTTER 201: SWSFGRRSGG SSAASKGGAT IGQLKSSSWA VGRNWSAAKQ IHAMTANLTP PRGNEAAGLP QPMFIMSTVM VFVMWVLTAA VPCQERSGLA NHLPVPPKHL 301: NWAQSLIGIH EKIGDEWKKK EKKGSAGLME EMTRMEKLGH SLMEFADGFH YPAEKDAAES AAVQVAEMAE ICRRMEEELV PLQQQIREVF HRIVRSRAEI 401: LEVLEQAGKV SAPVV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)