AT1G63880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response to fungus, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G63870.1); Has 17518 Blast hits to 14440 proteins in 610 species: Archae - 16; Bacteria - 959; Metazoa - 689; Fungi - 60; Plants - 15378; Viruses - 8; Other Eukaryotes - 408 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:23712514..23716047 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115421.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.76 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1017 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASPSSFSSQ NYKFNVFASF HGPDVRKTLL SHIRLQFNRN GITMFDDQKI VRSATIGPSL VEAIKESRIS IVILSKKYAS SSWCLDELVE ILECKKAMGQ 0101: IVMTIFYGVD PSDVRKQIGK FGIAFNETCA RKTEEERQKW SKALNQVSNI AGEDFLRWDN EAIMIEKIAR DVLDKLNATP SRDFDGMVGI EAHLREIKSL 0201: LDLDNVEVKI VAIAGPAGIG KTTIARALYG LLSKRFQLSC FVDNLRGSYH SGFDEYGFKL HLQEQFLSKV LNQSGMRICH LGAIKENLSD QRVLIILDDV 0301: NKLKQLEALA NETTWFGPGS RIVVTTENKE LLQQHGINNT YHVGFPSDED ALKILCSYAF KQTSPRHGFE ELSESVTKLC GKLPLGLCVV GSSLRGKKED 0401: EWEDVVTRLE TILDQDIEDV LRVGYESLDE NAQTLFLHIA IFFNKEDGDL VKTMFAESDL DVKYGLKILE NRSLIKMKIF SNGDTKIVMH RLLQQMGKRA 0501: IQKQEPWERQ ILIDAREICH VLEHAKGTGW NVHGMSFDIS RISEVSIRKK AFKRMPNLQF LKVYKSKDDG NNRMHVPEEM DFPCLLRLLD WKAYPSKSLP 0601: PTFNPEHLVE LNMHSSQLEY LWQGTQPLKN LKKMDLSQSK NLKQLPDLSN ATNLEYLYLM GCESLIEIPS SISHLHKLEM LATVGCINLE VIPAHMNLES 0701: LQTVYLGGCS RLRNIPVMST NIRYLFITNT AVEGVPLCPG LKTLDVSGSR NFKGLLTHLP TSLTTLNLCY TDIERIPDCF KSLHQLKGVN LRGCRRLASL 0801: PELPRSLLTL VADDCESLET VFCPLNTLKA SFSFANCFKL DREARRAIIQ QSFFMGKAVL PGREVPAVFD HRAKGYSLTI RPDGNPYTSF VFCVVVSRNQ 0901: KSDKTIPPSL LWRRIIAQDE GYPVEVWNRI GDVFKYRTEH LLIFHFDFLE FDNRDIVFEF SSESHDFDII ECGAKVLAEK SIKESYESGS DQAFEDDVVF 1001: EPSKAFGDEK YGDCCIL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)