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AT1G63800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.929
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-conjugating enzyme 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ubiquitin-conjugating enzyme 5 (UBC5); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Ubiquitin-conjugating enzyme (InterPro:IPR015581); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 4 (TAIR:AT5G41340.1); Has 8752 Blast hits to 8751 proteins in 386 species: Archae - 0; Bacteria - 0; Metazoa - 4011; Fungi - 1743; Plants - 1591; Viruses - 20; Other Eukaryotes - 1387 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G63800-MONOMERBioGrid:27904EC:2.3.2.23eggNOG:ENOG410XRC5eggNOG:KOG0416EMBL:AC010852EMBL:AC011622
EMBL:AK230439EMBL:AY074347EMBL:AY114061EMBL:CP002684EMBL:DQ027020EMBL:L19356EnsemblPlants:AT1G63800
EnsemblPlants:AT1G63800.1entrez:842683Gene3D:3.10.110.10GeneID:842683Genevisible:P42749GO:GO:0004842GO:GO:0005524
GO:GO:0005829GO:GO:0006511GO:GO:0031625GO:GO:0061630Gramene:AT1G63800.1hmmpanther:PTHR24067hmmpanther:PTHR24067:SF129
HOGENOM:HOG000233452InParanoid:P42749IntAct:P42749InterPro:IPR000608InterPro:IPR016135InterPro:IPR023313KEGG:ath:AT1G63800
KO:K10576OMA:INTESPYPaxDb:P42749Pfam:P42749Pfam:PF00179Pfscan:PS50127PhylomeDB:P42749
PIR:A96663PIR:S43786PRIDE:P42749PRO:PR:P42749PROSITE:PS00183PROSITE:PS50127ProteinModelPortal:P42749
Proteomes:UP000006548RefSeq:NP_564817.2scanprosite:PS00183SMR:P42749STRING:3702.AT1G63800.1SUPFAM:SSF54495TAIR:AT1G63800
tair10-symbols:UBC5UniGene:At.43954UniGene:At.67556UniPathway:UPA00143UniProt:P42749
Coordinates (TAIR10) chr1:-:23667888..23669003
Molecular Weight (calculated) 21179.90 Da
IEP (calculated) 4.01
GRAVY (calculated) -0.59
Length 185 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSPSKRREM DLMKLMMSDY KVEMINDGMQ EFFVEFSGPK DSIYEGGVWK IRVELPDAYP YKSPSVGFIT KIYHPNVDEM SGSVCLDVIN QTWSPMFDLV
101: NVFETFLPQL LLYPNPSDPL NGEAAALMMR DRPTYEQRVK EYCEKYAKPR ADTEEMSSDD EMSEDEYASD GDDEDDVAIA GKLDP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)