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AT1G63780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:14505352 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal RNA processing Brix domain protein
Curator
Summary (TAIR10)
Small nucleolar ribonucleoprotein protein involved in ribosomal RNA processing. Located in nucleolus and cajal bodies.
Computational
Description (TAIR10)
IMP4; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); BEST Arabidopsis thaliana protein match is: Ribosomal RNA processing Brix domain protein (TAIR:AT4G01560.1); Has 804 Blast hits to 801 proteins in 232 species: Archae - 12; Bacteria - 0; Metazoa - 253; Fungi - 267; Plants - 106; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2136eggNOG:KOG2781EMBL:AC010852EMBL:AC011622
EMBL:AY088147EMBL:AY093002EMBL:AY114605EMBL:CP002684
EnsemblPlants:AT1G63780EnsemblPlants:AT1G63780.1entrez:842682Gene3D:3.40.50.10480
GeneID:842682GO:GO:0005730GO:GO:0005732GO:GO:0006364
GO:GO:0015030GO:GO:0016363GO:GO:0019013GO:GO:0030515
GO:GO:0032040GO:GO:0034457GO:GO:0042134Gramene:AT1G63780.1
hmmpanther:PTHR22734hmmpanther:PTHR22734:SF2HOGENOM:HOG000172063InterPro:IPR004154
InterPro:IPR007109KEGG:ath:AT1G63780KO:K14561OMA:GTMSEQY
Pfam:PF04427Pfscan:PS50833PhylomeDB:Q9S826PIR:H96662
PROSITE:PS50833Proteomes:UP000006548RefSeq:NP_176564.1SMART:SM00879
STRING:3702.AT1G63780.1SUPFAM:SSF52954TAIR:AT1G63780tair10-symbols:IMP4
UniGene:At.43038UniProt:Q9S826
Coordinates (TAIR10) chr1:-:23665045..23667243
Molecular Weight (calculated) 34108.00 Da
IEP (calculated) 9.86
GRAVY (calculated) -0.63
Length 294 amino acids
Sequence (TAIR10)
(BLAST)
001: MQRRLVRLKK EYIYRKSLEG DERKVYEQKR LIREALQEGK PIPTELRNVE AKLRQEIDLE DQNTAVPRSH IDDEYANATE ADPKILLTTS RNPSAPLIRF
101: TKELKFVFPN SQRINRGSQV ISEIIETARS HDFTDVILVH EHRGVPDGLI ISHLPFGPTA YFGLLNVVTR HDISDKKSIG KMPEQYPHLI FNNFTTQMGQ
201: RVGNILKHIF PAPKLDAKRI VTFSNQSDYI SFRNHVYDKG EGGPKSIELK EIGPRFELRL YQVKLGTVEQ NEAEIEWVIR PYMNTSKKRK FIGE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)