AT1G63750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.555 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response, apoptosis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G58120.1); Has 21268 Blast hits to 16638 proteins in 741 species: Archae - 13; Bacteria - 2093; Metazoa - 2188; Fungi - 103; Plants - 16269; Viruses - 13; Other Eukaryotes - 589 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:23652263..23655333 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 109102.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.00 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 964 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIKKIARDVS YKLNATPSKD FEDMMGLEAH LKKIQSLLRL DYKDEALIIG ISGPAGIGKS TIARALESRL SDRFQLTCFM DLRGSENNGL HDYGQQLRLQ 101: EQLLAKVLNQ DGTRICHLGV LQQRLSDLRV LIILDDVSDI KQLKALAKET TWFGPGSRII VTTENKDLLQ QRGIDSTYHV GFPSREEALE IFCKFAFEQS 201: SPPHAFEKLA ARITHLCGNL PLGLCVMGSS LFGKKQDEWE FVVHRLETNP GQEIDDVLRV GYERLHENDQ MLFLHIAIFF NYRDRDLVEA MLADDGNLDV 301: GNWLKFLINK SLIEIYRTGQ IVMHKLLQQV GRQAIRRQEP WKRQILINAN EICDLLRYEK GTSCNVSGIS FDTSGISEVT ICDGAFKRLH DLRFLHVYKS 401: RDDGNNRVHI PEKVEFPPRL RLLHWAAYPS KSLPPTFNLE CLVELNMRES LVEKLWEGTQ HLKNLKYMDL TESKNLKELP DLSNATNLEY FYLDNCESLV 501: EIPSSFAHLH KLEWLEMNNC INLQVIPAHM NLTSVKQVNM KGCSRLRKFP VISRHIEALD ISDNTELEDM PASIASWCHL VYLDMSHNEK LQGLTQLPTS 601: LRHLNLSYTD IESIPDCIKA LHQLEELCLS GCTRLASLPD LPCSIKALEA EDCESLESVS SPLYTPSARL SFTNCFKLGG EAREAIIRRS SDSTGSVLLP 701: GREVPAEFDH RAQGNSLSIL LPLGGNSQFM VCVVISPRHD ITKMSNESEL LCRINGESCS YDEEFDIVDV SNCRREHLFI FHSGLLRMGR SEAGTEMVFE 801: FSSALQEDFD IIECGVKIWT PQSIRRGYLA FGEDDDGTDG VICDTEDVDQ MTDETKGGNN GGSSDEEDGK IHMYSHESGE TSESESESEK EDESEPRETS 901: EADADGDYES VSRKRAKKTT SASTDLKLVS IDYLRISNLL KYIFLILVLL LILVVLMSMR LFLA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)