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AT1G63720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 490 Blast hits to 394 proteins in 96 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 88; Plants - 175; Viruses - 14; Other Eukaryotes - 79 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTV5eggNOG:ENOG41107HBEMBL:AF370335EMBL:AF428370EMBL:AY062993EMBL:CP002684EnsemblPlants:AT1G63720
EnsemblPlants:AT1G63720.1entrez:842676GeneID:842676Gramene:AT1G63720.1hmmpanther:PTHR31798hmmpanther:PTHR31798:SF2HOGENOM:HOG000077478
KEGG:ath:AT1G63720OMA:YEFQFYQPhylomeDB:Q93W23Proteomes:UP000006548RefSeq:NP_564816.1STRING:3702.AT1G63720.1TAIR:AT1G63720
UniGene:At.18166UniProt:Q93W23
Coordinates (TAIR10) chr1:-:23636122..23637348
Molecular Weight (calculated) 38981.30 Da
IEP (calculated) 7.66
GRAVY (calculated) -0.52
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSGANGNNV FDTINAAASA IASSDDRLHQ SSPIHKKRKW WNRWSLLKCF GSSRQRKRIG NSVLVPEPVS MSSSNSTTSN SGYRSVITTL PFIAPPSSPA
101: SFFQSEPPSA TQSPVGILSF SPLPCNNRPS IFAIGPYAHE TQLVSPPVFS TYTTEPSSAP ITPPLDDSSI YLTTTTPSSP EVPFAQLFNS NHQTGSYGYK
201: FPMSSSYEFQ FYQLPPGSPL GQLISPSPGS GPTSPFPDGE TSLFPHFQVS DPPKLLSPKT AGVTTPCKEQ KIVRPHKPVS FDLDADHVIR CVDQKLRTTF
301: PEASSDQESM NHSSLGSNKE FNFGTDEKHL TVDEHRSASP KNSNDWSFFP VMQSGTLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)