AT1G63720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 490 Blast hits to 394 proteins in 96 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 88; Plants - 175; Viruses - 14; Other Eukaryotes - 79 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:23636122..23637348 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 38981.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.66 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||
| Length | 358 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSGANGNNV FDTINAAASA IASSDDRLHQ SSPIHKKRKW WNRWSLLKCF GSSRQRKRIG NSVLVPEPVS MSSSNSTTSN SGYRSVITTL PFIAPPSSPA 101: SFFQSEPPSA TQSPVGILSF SPLPCNNRPS IFAIGPYAHE TQLVSPPVFS TYTTEPSSAP ITPPLDDSSI YLTTTTPSSP EVPFAQLFNS NHQTGSYGYK 201: FPMSSSYEFQ FYQLPPGSPL GQLISPSPGS GPTSPFPDGE TSLFPHFQVS DPPKLLSPKT AGVTTPCKEQ KIVRPHKPVS FDLDADHVIR CVDQKLRTTF 301: PEASSDQESM NHSSLGSNKE FNFGTDEKHL TVDEHRSASP KNSNDWSFFP VMQSGTLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)