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AT1G63690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.868
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18067581 (2008): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SIGNAL PEPTIDE PEPTIDASE-LIKE 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (SPPL2); FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endosome, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (TAIR:AT1G01650.1); Has 1779 Blast hits to 1755 proteins in 292 species: Archae - 1; Bacteria - 179; Metazoa - 755; Fungi - 159; Plants - 440; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).
Protein Annotations
BioGrid:27894EC:3.4.23.-eggNOG:ENOG410ZP52eggNOG:KOG2442EMBL:AC011622EMBL:AY062807EMBL:AY086545
EMBL:BT008895EMBL:CP002684EnsemblPlants:AT1G63690EnsemblPlants:AT1G63690.1entrez:842673ExpressionAtlas:Q8W469GeneID:842673
Genevisible:Q8W469GO:GO:0004190GO:GO:0005768GO:GO:0010008GO:GO:0016021hmmpanther:PTHR12174hmmpanther:PTHR12174:SF41
HOGENOM:HOG000239626InParanoid:Q8W469InterPro:IPR003137InterPro:IPR006639InterPro:IPR007369KEGG:ath:AT1G63690MEROPS:A22.A05
PANTHER:PTHR12174PaxDb:Q8W469Pfam:PF02225Pfam:PF04258Pfam:Q8W469PhylomeDB:Q8W469PIR:H96661
PRIDE:Q8W469PRO:PR:Q8W469ProteinModelPortal:Q8W469Proteomes:UP000006548RefSeq:NP_564815.1SMART:SM00730STRING:3702.AT1G63690.1
SUPFAM:SSF52025TAIR:AT1G63690tair10-symbols:ATSPPL2tair10-symbols:SPPL2TMHMM:TMhelixUniGene:At.19793UniProt:Q8W469
Coordinates (TAIR10) chr1:+:23618490..23622082
Molecular Weight (calculated) 59840.60 Da
IEP (calculated) 6.97
GRAVY (calculated) 0.42
Length 540 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSLRFLRIL LLSSSILLLS LRSTVTAGDI VHQDNLAPKK PGCENDFVLV KVQTWIDGVE NEEFVGVGAR FGKRIVSKEK NANQTHLVFA NPRDSCTPLK
101: NKLSGDVVIV ERGNCRFTAK ANNAEAAGAS ALLIINNQKE LYKMVCEPDE TDLDIQIPAV MLPQDAGASL QKMLANSSKV SAQLYSPRRP AVDVAEVFLW
201: LMAIGTILCA SYWSAWSARE AAIEHDKLLK DAIDEIPNTN DGGSGVVEIN SISAIFFVVL ASGFLVILYK LMSYWFVELL VVVFCIGGVE GLQTCLVALL
301: SRWFQRAADT YVKVPFLGPI SYLTLAVSPF CIVFAVLWAV YRVHSFAWIG QDVLGIALII TVLQIVHVPN LKVGTVLLSC AFLYDIFWVF VSKKLFHESV
401: MIVVARGDKS GEDGIPMLLK IPRMFDPWGG YSIIGFGDIL LPGLLIAFAL RYDWLANKTL RTGYFIWAMV AYGLGLLITY VALNLMDGHG QPALLYIVPF
501: TLGTMLTLAR KRDDLWILWT KGEPERACPH HVRLEQCSEK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)