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AT1G63650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY.
Computational
Description (TAIR10)
ENHANCER OF GLABRA 3 (EGL3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: epidermal cell fate specification, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G41315.1); Has 3538 Blast hits to 3375 proteins in 203 species: Archae - 0; Bacteria - 2; Metazoa - 64; Fungi - 64; Plants - 3403; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
BioGrid:27890eggNOG:ENOG410IKXPeggNOG:ENOG410Z2WKEMBL:AB493517EMBL:AC011622EMBL:AF013465EMBL:AF027732
EMBL:AF251687EMBL:CP002684EnsemblPlants:AT1G63650EnsemblPlants:AT1G63650.1EnsemblPlants:AT1G63650.2EnsemblPlants:AT1G63650.3entrez:842669
ExpressionAtlas:Q9CAD0Gene3D:4.10.280.10GeneID:842669Genevisible:Q9CAD0GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0007275GO:GO:0009957Gramene:AT1G63650.1Gramene:AT1G63650.2Gramene:AT1G63650.3
hmmpanther:PTHR11514hmmpanther:PTHR11514:SF37HOGENOM:HOG000237985InParanoid:Q9CAD0IntAct:Q9CAD0InterPro:IPR011598InterPro:IPR025610
KEGG:ath:AT1G63650ncoils:CoilOMA:ISTRSDYPaxDb:Q9CAD0Pfam:PF00010Pfam:PF14215Pfam:Q9CAD0
Pfscan:PS50888PhylomeDB:Q9CAD0PIR:D96661PRIDE:Q9CAD0PRO:PR:Q9CAD0PROSITE:PS50888ProteinModelPortal:Q9CAD0
Proteomes:UP000006548RefSeq:NP_001185302.1RefSeq:NP_176552.1RefSeq:NP_974080.1SMART:SM00353SMR:Q9CAD0STRING:3702.AT1G63650.1
SUPFAM:SSF47459TAIR:AT1G63650tair10-symbols:ATMYC-2tair10-symbols:EGL1tair10-symbols:EGL3UniGene:At.25024UniProt:C0SV14
UniProt:Q9CAD0
Coordinates (TAIR10) chr1:+:23599809..23602734
Molecular Weight (calculated) 66623.60 Da
IEP (calculated) 4.81
GRAVY (calculated) -0.43
Length 596 amino acids
Sequence (TAIR10)
(BLAST)
001: MATGENRTVP DNLKKQLAVS VRNIQWSYGI FWSVSASQPG VLEWGDGYYN GDIKTRKTIQ AAEVKIDQLG LERSEQLREL YESLSLAESS ASGSSQVTRR
101: ASAAALSPED LTDTEWYYLV CMSFVFNIGE GIPGGALSNG EPIWLCNAET ADSKVFTRSL LAKSASLQTV VCFPFLGGVL EIGTTEHIKE DMNVIQSVKT
201: LFLEAPPYTT ISTRSDYQEI FDPLSDDKYT PVFITEAFPT TSTSGFEQEP EDHDSFINDG GASQVQSWQF VGEEISNCIH QSLNSSDCVS QTFVGTTGRL
301: ACDPRKSRIQ RLGQIQEQSN HVNMDDDVHY QGVISTIFKT THQLILGPQF QNFDKRSSFT RWKRSSSVKT LGEKSQKMIK KILFEVPLMN KKEELLPDTP
401: EETGNHALSE KKRREKLNER FMTLRSIIPS ISKIDKVSIL DDTIEYLQDL QKRVQELESC RESADTETRI TMMKRKKPDD EEERASANCM NSKRKGSDVN
501: VGEDEPADIG YAGLTDNLRI SSLGNEVVIE LRCAWREGIL LEIMDVISDL NLDSHSVQSS TGDGLLCLTV NCKHKGTKIA TTGMIQEALQ RVAWIC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)