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AT1G63610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14910.1); Has 537 Blast hits to 411 proteins in 100 species: Archae - 0; Bacteria - 231; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJRFeggNOG:ENOG4111Q9SEMBL:AC011622EMBL:AK227443EMBL:BT006492EMBL:CP002684EnsemblPlants:AT1G63610
EnsemblPlants:AT1G63610.1entrez:842666ExpressionAtlas:Q9CAC8GeneID:842666Gramene:AT1G63610.1hmmpanther:PTHR33598hmmpanther:PTHR33598:SF4
HOGENOM:HOG000005692InterPro:IPR008479KEGG:ath:AT1G63610ncoils:CoilPfam:PF05542PhylomeDB:Q9CAC8PIR:B96661
Proteomes:UP000006548RefSeq:NP_176549.3STRING:3702.AT1G63610.2TAIR:AT1G63610UniGene:At.36100UniProt:Q9CAC8
Coordinates (TAIR10) chr1:-:23583675..23585599
Molecular Weight (calculated) 37957.70 Da
IEP (calculated) 6.56
GRAVY (calculated) -0.36
Length 340 amino acids
Sequence (TAIR10)
(BLAST)
001: MCSLSMQFSL LQSPPSRPCP SFLANHEPKL STTSSSVTFP LKTNTWKCSG TGNLLVLRVK AYGSSSDSSA DSSTPPNGTR QPKSRRDILL EYVQNVKPEF
101: MEMFVKRAPK HVVEAMRQTV TNMIGTLPPQ FFAVTVTSVA ENLAQLMMSV LMTGYMFRNA QYRLELQQSL EQVALPEPRD QKGGDEDYAP GTQKNVSGEV
201: IRWNNVSGPE KIDAKKYIEL LEAEIEELNR QVGRKSANQQ NEILEYLKSL EPQNLKELTS TAGEDVAVAM NTFVKRLLAV SDPNQMKTNV TETSAADLAK
301: LLYWLMVVGY SIRNIEVRFD MERVLGTQPK LAELPPGEII
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)