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AT1G63530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G63540.1); Has 10212 Blast hits to 4024 proteins in 434 species: Archae - 1; Bacteria - 1259; Metazoa - 3608; Fungi - 2247; Plants - 291; Viruses - 90; Other Eukaryotes - 2716 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVJIeggNOG:ENOG41105UIEMBL:AC008047EMBL:AY630768EMBL:AY924715EMBL:CP002684EnsemblPlants:AT1G63530
EnsemblPlants:AT1G63530.1entrez:842658GeneID:842658GO:GO:0009860Gramene:AT1G63530.1HOGENOM:HOG000153466KEGG:ath:AT1G63530
OMA:HASPIGSPhylomeDB:Q9SH37Proteomes:UP000006548RefSeq:NP_176541.1TAIR:AT1G63530UniGene:At.50800UniProt:Q9SH37
Coordinates (TAIR10) chr1:+:23563654..23565236
Molecular Weight (calculated) 51049.40 Da
IEP (calculated) 6.84
GRAVY (calculated) -0.12
Length 499 amino acids
Sequence (TAIR10)
(BLAST)
001: MRVDFSEPEY RNCYHCRDSG ILNTQESEPN NVIGSSITSV PVSSGPFQAL GHASAAIGST STSSPVQSSS SFSFGSAPAA TTSVGVSSTS TPTPISFLPF
101: GYVPPPPPSS SLSGPAQNVP WSISAYSTAG RGVEWAWARP DVAVYPASSS SSSTSTVVFG TTPVSVSSLF GPSQDFPKTT FACCSSTPAP TRCECSFAKP
201: FFGSSPASSS SNLFGPNPST TTASVFGTSA TSGSSLFGPA QHPLSYDSIG GSAFAGVKTS SPQPLGFNGA TTLLPSSHEG QNISSFKPYV DKSHDELRWE
301: YYKKEAKGGS FPAAHASPIG SKPNAVFSPS TVSTSLFASP SVPDHHQRTN FSTTLGNFTG PAFGFFPAAA GGATTFSSTG FGQPNAPFPG FDSQFPSAFS
401: SFSTTYPAVS SSVQRPHETG AVSSPAFGCT ACGATSSSSA SDHFTFNGAT TPPGLFFPTT SSGPMMFGTT LAAQGTTPAL QTYPVQGFIL LPFAAMSLQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)