suba logo
AT1G63500.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein kinase protein with tetratricopeptide repeat domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein kinase protein with tetratricopeptide repeat domain; FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Tetratricopeptide-like helical (InterPro:IPR011990), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase protein with tetratricopeptide repeat domain (TAIR:AT5G41260.1); Has 34543 Blast hits to 34010 proteins in 1386 species: Archae - 8; Bacteria - 2627; Metazoa - 7585; Fungi - 183; Plants - 22470; Viruses - 98; Other Eukaryotes - 1572 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGD2eggNOG:ENOG410XQTVEMBL:CP002684EnsemblPlants:AT1G63500EnsemblPlants:AT1G63500.1entrez:842656Gene3D:1.25.40.10
GeneID:842656GO:GO:0004672GO:GO:0005524GO:GO:0005886GO:GO:0009506Gramene:AT1G63500.1hmmpanther:PTHR27001
hmmpanther:PTHR27001:SF147InParanoid:F4I3M3InterPro:IPR000719InterPro:IPR001245InterPro:IPR011009InterPro:IPR011990iPTMnet:F4I3M3
KEGG:ath:AT1G63500KO:K14500OMA:FANAIDCPaxDb:F4I3M3Pfam:PF07714Pfam:PF13414Pfscan:PS50011
PRIDE:F4I3M3PROSITE:PS50011ProteinModelPortal:F4I3M3Proteomes:UP000006548RefSeq:NP_176539.4SMR:F4I3M3STRING:3702.AT1G63500.1
SUPFAM:SSF48452SUPFAM:SSF56112SwissPalm:F4I3M3TAIR:AT1G63500UniGene:At.36122UniProt:F4I3M3
Coordinates (TAIR10) chr1:+:23556015..23558403
Molecular Weight (calculated) 54801.30 Da
IEP (calculated) 6.33
GRAVY (calculated) -0.43
Length 487 amino acids
Sequence (TAIR10)
(BLAST)
001: MGCEVSKLCA FCCVSDPEGS NHGVTGLDED RRGEGNDLPQ FREFSIETLR NATSGFATEN IVSEHGEKAP NVVYKGKLDN QRRIAVKRFN RKAWPDSRQF
101: LEEAKAVGQL RNYRMANLLG CCYEGEERLL VAEFMPNETL AKHLFHWESQ PMKWAMRLRV ALHIAQALEY CTGKGRALYH DLNAYRVLFD DDSNPRLSCF
201: GLMKNSRDGK SYSTNLAFTP PEYLRTGRVT PESVMYSYGT LLLDLLSGKH IPPSHALDLI RDRNIQMLID SCLEGQFSSD DGTELIRLAS RCLQYEPRER
301: PNPKSLVTAM IPLQKDLETP SHQLMGIPSS ASTTPLSPLG EACLRTDLTA IHEILEKLSY KDDEGAATEL SFQMWTNQMQ DSLNFKKKGD VAFRHKEFAN
401: AIDCYSQFIE GGTMVSPTVY ARRSLCYLMN EMPQEALNDA MQAQVISPAW HIASYLQAVA LSALGQENEA HAALKDGSML ESKRNRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)