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AT1G63480.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AT hook motif DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956), A.T hook-like (InterPro:IPR020478); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT1G63470.1); Has 860 Blast hits to 856 proteins in 70 species: Archae - 0; Bacteria - 8; Metazoa - 47; Fungi - 33; Plants - 756; Viruses - 1; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG0CeggNOG:ENOG4111DAGEMBL:AC008047EMBL:AY070384EMBL:AY096576EMBL:BR000348EMBL:CP002684
EnsemblPlants:AT1G63480EnsemblPlants:AT1G63480.1entrez:842654GeneID:842654Genevisible:Q8LPN5GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0043621Gramene:AT1G63480.1hmmpanther:PTHR31500hmmpanther:PTHR31500:SF9HOGENOM:HOG000116506
IntAct:Q8LPN5InterPro:IPR005175InterPro:IPR017956KEGG:ath:AT1G63480OMA:GARAKTHPaxDb:Q8LPN5Pfam:PF03479
Pfam:Q8LPN5Pfscan:PS51742PhylomeDB:Q8LPN5PRIDE:Q8LPN5PRINTS:PR00929PRO:PR:Q8LPN5PROSITE:PS51742
ProteinModelPortal:Q8LPN5Proteomes:UP000006548RefSeq:NP_176537.2STRING:3702.AT1G63480.1SUPFAM:SSF117856TAIR:AT1G63480UniGene:At.28375
UniProt:Q8LPN5
Coordinates (TAIR10) chr1:-:23539872..23541685
Molecular Weight (calculated) 38313.90 Da
IEP (calculated) 8.90
GRAVY (calculated) -0.63
Length 361 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGREAMAFP GSHSQYYLQR GAFTNLAPSQ VASGLHAPPP HTGLRPMSNP NIHHPQANNP GPPFSDFGHT IHMGVVSSAS DADVQPPPPP PPPEEPMVKR
101: KRGRPRKYGE PMVSNKSRDS SPMSDPNEPK RARGRPPGTG RKQRLANLGE WMNTSAGLAF APHVISIGAG EDIAAKVLSF SQQRPRALCI MSGTGTISSV
201: TLCKPGSTDR HLTYEGPFEI ISFGGSYLVN EEGGSRSRTG GLSVSLSRPD GSIIAGGVDM LIAANLVQVV ACSFVYGARA KTHNNNNKTI RQEKEPNEED
301: NNSEMETTPG SAAEPAASAG QQTPQNFSSQ GIRGWPGSGS GSGRSLDICR NPLTDFDLTR G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)