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AT1G63470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AT hook motif DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT1G63480.1); Has 999 Blast hits to 995 proteins in 66 species: Archae - 0; Bacteria - 22; Metazoa - 171; Fungi - 26; Plants - 768; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG0CeggNOG:ENOG4111DAGEMBL:AC008047EMBL:AK118329EMBL:BR000341EMBL:BT005545EMBL:CP002684
EnsemblPlants:AT1G63470EnsemblPlants:AT1G63470.1entrez:842653GeneID:842653Genevisible:Q8GXB3GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT1G63470.1hmmpanther:PTHR31500hmmpanther:PTHR31500:SF9IntAct:Q8GXB3InterPro:IPR005175
InterPro:IPR017956KEGG:ath:AT1G63470OMA:HMGMASPPaxDb:Q8GXB3Pfam:PF03479Pfam:Q8GXB3Pfscan:PS51742
PhylomeDB:Q8GXB3PRIDE:Q8GXB3PRO:PR:Q8GXB3PROSITE:PS51742ProteinModelPortal:Q8GXB3Proteomes:UP000006548RefSeq:NP_176536.2
SMART:SM00384STRING:3702.AT1G63470.1SUPFAM:SSF117856TAIR:AT1G63470UniGene:At.36125UniGene:At.73033UniProt:Q8GXB3
Coordinates (TAIR10) chr1:-:23536831..23538863
Molecular Weight (calculated) 39646.10 Da
IEP (calculated) 10.44
GRAVY (calculated) -0.49
Length 378 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGREAMAFP GSHSQFYLQR GVFTNLTPSQ VASGLHAPPP PPGMRPMSNP NIHHPQASNP GPPFSMAEHR HSDFGHSIHM GMASPAAVQP TLQLPPPPSE
101: QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK
201: RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN
301: NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS GWPVSGSGSG RSLDSSRNPL TDIDLTRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)