AT1G63450.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.551 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : root hair specific 8 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
root hair specific 8 (RHS8); FUNCTIONS IN: catalytic activity; LOCATED IN: membrane; EXPRESSED IN: root hair, root; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G41250.1); Has 717 Blast hits to 713 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 686; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:23532523..23534517 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76566.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.67 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||||||||||
| Length | 664 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLSKHLQKL VHKRESKKQP NKKMPVSVSK LRRPRTSKKT ETGNPEKTLK DPRTCCNNLF SIFSARSFLY RVPLTILFLF LIYLWSTSTT VISGNVVHIC 101: ISSRKLTDLY CLTAGSQPAL RAPVNNFTAP ASEDVVTSKE EKNVFVLGKD GDKGFAENET FEGGKDSDKS TVGENLTINK NETFTGETSG ERVSILNQDA 201: KPIHEKNLDS VLDQDSLPKN EIDQDFIIDW DPETGEERYR YFKAKTEDEE TGLKSTEEYI QIQRTWLSMG NNRKKPGSCE GKGVYVYDLP SKFNKDLLRE 301: CSDMVPWADF CNYFKNDAFG ELMESMGKGW FRTHQYSLEP IFHSRILKHP CRVHNETQAK LFYVPFYGGM DVLRWHFKNV SSDVKDVLPI EIVKWLGSKK 401: SWRKNSGKDH VFVLGKISWD FRRVDKYSWG SSLLEMQEMK NPTKLLIERN PWEVNDIAIP HPTYFHPKTD TDIAIWQNKI LGKPRRSLIS FAGAARPGNP 501: ESIRSILIDQ CRSSPNQCRF LNCTDGGCDK SESVIELFRD SEFCLQPPGD SPTRKSIFDS LILGCIPVIF DPYSAYYQYT WHLPEDHRRY SVYINKEDVK 601: LKRVNVIEKL MSKTLRERED MRSYIVHELL PGLVYGDSNA KFERFRDAFD ITMDSLFKKI AKTV |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)