AT1G63350.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.916 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Disease resistance protein (CC-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G62630.1); Has 18724 Blast hits to 16763 proteins in 698 species: Archae - 14; Bacteria - 926; Metazoa - 3029; Fungi - 209; Plants - 14107; Viruses - 4; Other Eukaryotes - 435 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:23494935..23497631 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 102633.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.75 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 898 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGISFSIPFD PCVNKVSQWL DMKVSYTHNL EKNLVALETT MEELKAKRDD LLRKLKREED RGLQTLGEIK VWLNRVETIE SRVNDLLNAR NAELQRLCLC 101: GFCSKSLTTS YRYGKSVFLK LREVEKLERR VFEVISDQAS TSEVEEQQLQ PTIVGQETML DNAWNHLMED GVGIMGLYGM GGVGKTTLLT QINNKFSKYM 201: CGFDSVIWVV VSKEVNVENI LDEIAQKVHI SGEKWDTKYK YQKGVYLYNF LRKMRFVLFL DDIWEKVNLV EIGVPFPTIK NKCKVVFTTR SLDVCTSMGV 301: EKPMEVQCLA DNDAYDLFQK KVGQITLGSD PEIRELSRVV AKKCCGLPLA LNVVSETMSC KRTVQEWRHA IYVLNSYAAK FSGMDDKILP LLKYSYDSLK 401: GEDVKMCLLY CALFPEDAKI RKENLIEYWI CEEIIDGSEG IDKAENQGYE IIGSLVRASL LMEEVELDGA NIVCLHDVVR EMALWIASDL GKQNEAFIVR 501: ASVGLREILK VENWNVVRRM SLMKNNIAHL DGRLDCMELT TLLLQSTHLE KISSEFFNSM PKLAVLDLSG NYYLSELPNG ISELVSLQYL NLSSTGIRHL 601: PKGLQELKKL IHLYLERTSQ LGSMVGISCL HNLKVLKLSG SSYAWDLDTV KELEALEHLE VLTTTIDDCT LGTDQFLSSH RLMSCIRFLK ISNNSNRNRN 701: SSRISLPVTM DRLQEFTIEH CHTSEIKMGR ICSFSSLIEV NLSNCRRLRE LTFLMFAPNL KRLHVVSSNQ LEDIINKEKA HDGEKSGIVP FPKLNELHLY 801: NLRELKNIYW SPLPFPCLEK INVMGCPNLK KLPLDSKSGK HGGNGLIITH REMEWITRVE WEDEATKTRF LANRSSFSSS LICFSNDLVS RDMNCFHL |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)