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AT1G63260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.966
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tetraspanin10
Curator
Summary (TAIR10)
Member of TETRASPANIN family
Computational
Description (TAIR10)
tetraspanin10 (TET10); INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: tetraspanin3 (TAIR:AT3G45600.1); Has 817 Blast hits to 814 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 379; Fungi - 0; Plants - 422; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK32eggNOG:ENOG410YC1CEMBL:AC022355EMBL:AK228132EMBL:AK316928EMBL:BT011569EMBL:BT012253
EMBL:BX816848EMBL:CP002684EnsemblPlants:AT1G63260EnsemblPlants:AT1G63260.1entrez:842632GeneID:842632Genevisible:F4I214
GO:GO:0016021hmmpanther:PTHR32191hmmpanther:PTHR32191:SF22HOGENOM:HOG000238911InParanoid:F4I214InterPro:IPR000301InterPro:IPR018499
KEGG:ath:AT1G63260OMA:NSILLWIPaxDb:F4I214Pfam:F4I214Pfam:PF00335PIR:D96658PRINTS:PR00259
PRO:PR:F4I214Proteomes:UP000006548RefSeq:NP_001031222.1RefSeq:NP_176515.3RefSeq:NP_974077.1STRING:3702.AT1G63260.1TAIR:AT1G63260
tair10-symbols:TET10TCDB:8.A.40.4.2TMHMM:TMhelixUniGene:At.36157UniProt:F4I214
Coordinates (TAIR10) chr1:-:23467105..23468945
Molecular Weight (calculated) 31920.50 Da
IEP (calculated) 9.72
GRAVY (calculated) 0.35
Length 284 amino acids
Sequence (TAIR10)
(BLAST)
001: MGMGTSTFVI RWVNLLTMLL AVAVIIFGVW MSTHNDGCRR SLTFPVIALG GFIFLISIIG FLGACKRSVA LLWIYLAVLL IVLIAILVFT VLAFIVTNNG
101: SGHTNPGLRY KEYKLNDYSS WFLKQLNNTS NWIRLKSCLV KSEQCRKLSK KYKTIKQLKS AELTPIEAGC CRPPSECGYP AVNASYYDLS FHSISSNKDC
201: KLYKNLRTIK CYNCDSCKAG VAQYMKTEWR LVAIFNVVLF VVLISSLLST RFDSEQSFGL LNGLVQISNI TFKDCQTTTV PKQF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)