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AT1G63160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.974
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : replication factor C 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
replication factor C 2 (RFC2); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA) (TAIR:AT1G21690.1); Has 17520 Blast hits to 17472 proteins in 2840 species: Archae - 620; Bacteria - 9832; Metazoa - 859; Fungi - 958; Plants - 372; Viruses - 89; Other Eukaryotes - 4790 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0470eggNOG:KOG0991EMBL:AC010795EMBL:BT031353EMBL:CP002684EnsemblPlants:AT1G63160EnsemblPlants:AT1G63160.1
entrez:842620Gene3D:3.40.50.300GeneID:842620Genevisible:Q9CAM7GO:GO:0003677GO:GO:0005524GO:GO:0005634
GO:GO:0006261Gramene:AT1G63160.1hmmpanther:PTHR11669hmmpanther:PTHR11669:SF5HOGENOM:HOG000224155InParanoid:Q9CAM7InterPro:IPR003593
InterPro:IPR003959InterPro:IPR008921InterPro:IPR013748InterPro:IPR027417KEGG:ath:AT1G63160KO:K10755OMA:HVKNMVK
PaxDb:Q9CAM7Pfam:PF00004Pfam:PF08542Pfam:Q9CAM7PhylomeDB:Q9CAM7PIR:B96657PRIDE:Q9CAM7
PRO:PR:Q9CAM7ProteinModelPortal:Q9CAM7Proteomes:UP000006548Reactome:R-ATH-110312Reactome:R-ATH-110314Reactome:R-ATH-110320Reactome:R-ATH-174411
Reactome:R-ATH-5651801Reactome:R-ATH-5655862Reactome:R-ATH-5656121Reactome:R-ATH-5656169Reactome:R-ATH-5696397Reactome:R-ATH-5696400Reactome:R-ATH-6782135
Reactome:R-ATH-6782210Reactome:R-ATH-69091RefSeq:NP_176504.1SMART:SM00382SMR:Q9CAM7STRING:3702.AT1G63160.1SUPFAM:SSF48019
SUPFAM:SSF52540TAIR:AT1G63160tair10-symbols:RFC2UniGene:At.36170UniProt:Q9CAM7
Coordinates (TAIR10) chr1:-:23422068..23423771
Molecular Weight (calculated) 36749.40 Da
IEP (calculated) 7.81
GRAVY (calculated) -0.08
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSSTSTG DGYNEPWVEK YRPSKVVDIV GNEDAVSRLQ VIARDGNMPN LILSGPPGTG KTTSILALAH ELLGTNYKEA VLELNASDDR GIDVVRNKIK
101: MFAQKKVTLP PGRHKVVILD EADSMTSGAQ QALRRTIEIY SNSTRFALAC NTSAKIIEPI QSRCALVRFS RLSDQQILGR LLVVVAAEKV PYVPEGLEAI
201: IFTADGDMRQ ALNNLQATFS GFSFVNQENV FKVCDQPHPL HVKNIVRNVL ESKFDIACDG LKQLYDLGYS PTDIITTLFR IIKNYDMAEY LKLEFMKETG
301: FAHMRICDGV GSYLQLCGLL AKLSIVRETA KAP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)