suba logo
AT1G63150.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 0.968
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Transacting siRNA generating locus.
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62910.1); Has 64382 Blast hits to 15012 proteins in 312 species: Archae - 5; Bacteria - 60; Metazoa - 1057; Fungi - 1283; Plants - 59548; Viruses - 0; Other Eukaryotes - 2429 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC010795EMBL:AY056252
EMBL:BT000997EMBL:CP002684EnsemblPlants:AT1G63150EnsemblPlants:AT1G63150.1
entrez:842619Gene3D:1.25.40.10GeneID:842619Genevisible:Q9CAM8
Gramene:AT1G63150.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF884HOGENOM:HOG000015176
InParanoid:Q9CAM8InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT1G63150
OMA:EMELNIFPaxDb:Q9CAM8Pfam:PF12854Pfam:PF13041
Pfam:Q9CAM8Pfscan:PS51375PhylomeDB:Q9CAM8PIR:A96657
PRIDE:Q9CAM8PRO:PR:Q9CAM8PROSITE:PS51375ProteinModelPortal:Q9CAM8
Proteomes:UP000006548RefSeq:NP_564809.1SMR:Q9CAM8STRING:3702.AT1G63150.1
SUPFAM:SSF48452TAIR:AT1G63150TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.26348UniGene:At.75283UniProt:Q9CAM8
Coordinates (TAIR10) chr1:+:23419399..23421288
Molecular Weight (calculated) 70794.30 Da
IEP (calculated) 7.32
GRAVY (calculated) 0.02
Length 629 amino acids
Sequence (TAIR10)
(BLAST)
001: MQRSISLTAK RLFVHWNLQG IGNPPTVPSF FNLCGSGCWE RSFASASGDY REILRNRLSD IIKVDDAVDL FGDMVKSRPF PSIVEFNKLL SAVAKMNKFE
101: LVISLGEQMQ TLGISHDLYT YSIFINCFCR RSQLSLALAV LAKMMKLGYE PDIVTLSSLL NGYCHSKRIS DAVALVDQMV EMGYKPDTFT FTTLIHGLFL
201: HNKASEAVAL VDQMVQRGCQ PDLVTYGTVV NGLCKRGDID LALNLLNKME AARIKANVVI FNTIIDSLCK YRHVEVAVDL FTEMETKGIR PNVVTYNSLI
301: NCLCNYGRWS DASRLLSNML EKKINPNVVT FNALIDAFFK EGKLVEAEKL HEEMIQRSID PDTITYNLLI NGFCMHNRLD EAKQMFKFMV SKDCLPNIQT
401: YNTLINGFCK CKRVEDGVEL FREMSQRGLV GNTVTYTTII QGFFQAGDCD SAQMVFKQMV SNRVPTDIMT YSILLHGLCS YGKLDTALVI FKYLQKSEME
501: LNIFIYNTMI EGMCKAGKVG EAWDLFCSLS IKPDVVTYNT MISGLCSKRL LQEADDLFRK MKEDGTLPNS GTYNTLIRAN LRDCDRAASA ELIKEMRSSG
601: FVGDASTISL VTNMLHDGRL DKSFLNMLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)